Gene omics information

Query gene ID At3g23830
Gene name GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8994.6At3g23830821966GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)encodes a glycine-rich RNA binding protein. Gene expression is induced by cold and reduced by ionic (salt) and non-ionic (mannitol) osmotic stress. Lines overexpressing the gene are slightly more tolerant to osmotic stress during germination.S.X.H.G.
0.5974.7At1g14620838024DECOY (DECOY)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMPOBS.X.H.G.
0.5873.8At3g4459082358460S acidic ribosomal protein P2 (RPP2D)F:structural constituent of ribosome;P:translational elongation;C:cytosol, cytosolic ribosome, ribosome, nucleus;MFPOAS.X.H.G.
0.5368.6At2g3206081776640S ribosomal protein S12 (RPS12C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleus;MOAFPS.X.H.G.
0.5267.4At1g07830837298ribosomal protein L29 family proteinF:structural constituent of ribosome;P:translation;C:mitochondrion, ribosome, mitochondrial ribosome, intracellular;MFOPS.X.H.G.
0.5267.4At4g35850829739pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:unknown;C:mitochondrion;POMFBAS.X.H.G.
0.4963.5At1g2691083703660S ribosomal protein L10 (RPL10B)F:structural constituent of ribosome;P:translation;C:ribosome, membrane, chloroplast envelope;MOAPFBS.X.H.G.
0.4963.5At4g10480826640nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPABVS.X.H.G.
0.4963.5At2g20060816525ribosomal protein L4 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast, large ribosomal subunit;BOMFAPS.X.H.G.
0.4862.5At3g18130821338RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C)Encodes a protein with similarity to mammalian RACKs. RACKs function to shuttle activated protein kinase C to different subcellular sites and may also function as a scaffold through physical interactions with other proteins. RACK1C has no phenotype on its own and probably acts redundantly with RACK1A and RACK1B.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
21.399.6GSM133317RIKEN-LI4AGSE5701AtGenExpress: Basic hormone treatment of seeds
20.799.6GSM133119RIKEN-YAMAUCHI2AGSE5687AtGenExpress: Different temperature treatment of seeds
20.699.6GSM184832Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
19.899.6GSM226544Slice2JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
18.499.5GSM133311RIKEN-LI1AGSE5701AtGenExpress: Basic hormone treatment of seeds
16.499.5GSM184840Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
16.199.5GSM133319RIKEN-LI5AGSE5701AtGenExpress: Basic hormone treatment of seeds
16.099.5GSM184831Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
15.899.5GSM252666Arabidopsis Root from tip to 130 mm proximal to tip (cut 4dpg) rep4GSE9996Organ regeneration in plants is independent of stem cell niche activity
15.699.5GSM184839Arabidopsis, root, longitudinal zone 1, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.071e-240At4g13860827020glycine-rich RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.042e-136At4g14300827071heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAC.G.S.X.
0.028e-134At4g24900828592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPC.G.S.X.
0.018e-134At2g18090816321PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing proteinF:protein binding, DNA binding, zinc ion binding;P:regulation of transcription, DNA-dependent;C:unknown;MPBOFC.G.S.X.
0.018e-134At1g23180838926armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:chloroplast;PMFOC.G.S.X.
0.033e+032At5g60230836145SEN2 (splicing endonuclease 2)putative subunit of tRNA splicing endonucleaseC.G.S.X.
0.113e+032At5g47320834779RPS19 (RIBOSOMAL PROTEIN S19)Nuclear encoded mitochondrial ribosome subunit.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.044e+032Glycine maxPsAffx.CL1441Contig1_atPsAffx.CL1441Contig1--3e+0At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)C.G.S.X.
0.046e+030Hordeum vulgareHY07C01u_atHY07C01u--5e-2At1g69780ATHB13C.G.S.X.
0.053e-240Oryza sativaOs01g0916600AK059446.1-RNA binding protein3e-2At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)C.G.S.X.
0.061e+034Populus trichocarpaPtpAffx.221756.1.S1_atpmrna38800hypothetical protein-4e-1At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)C.G.S.X.
0.042e-136Triticum aestivumTaAffx.29041.1.S1_atCA651757--2e-1At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)C.G.S.X.
0.032e-134Vitis vinifera1612541_atCF205016.1--3e-20At1g01820PEX11C (PEROXIN 11C)C.G.S.X.
0.045e+030Zea maysZm.6972.1.A1_atAI065883--8e+0At3g23830GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006970A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell.
XGO:0009651A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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