CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23800

Gene name SBP3 (selenium-binding protein 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA S.X. H.G.
0.71 84.2 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. S.X. H.G.
0.67 81.6 At1g65340 842842 CYP96A3 member of CYP96A S.X. H.G.
0.56 73.0 At3g48700 824031 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV S.X. H.G.
0.54 69.5 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO S.X. H.G.
0.53 68.6 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
0.48 62.5 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF S.X. H.G.
0.42 53.9 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.39 48.4 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM S.X. H.G.
0.30 32.1 At2g26040 817145 Bet v I allergen family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
80.2 99.9 GSM184500 Endodermis&Pericycle root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
76.0 99.9 GSM173648 mARF10 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
63.4 99.8 GSM133306 RIKEN-NAKABAYASHI2B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
60.2 99.8 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
59.2 99.8 GSM173621 Col-0 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
58.5 99.8 GSM173651 mARF10 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
57.2 99.8 GSM133984 Birnbaum_1-14_StageIII-3_Rep3_ATH1 GSE5749 A gene expression map of the Arabidopsis root
56.6 99.8 GSM299409 pkl Mutant Germinating Seeds With Uniconazole Treatment Set 5 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
55.7 99.8 GSM173628 ARF10 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
55.3 99.8 GSM299334 Wild Type Germinating Seeds With Uniconazole Treatment Set 2 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.50 1e-39 165 At4g14030 827039 SBP1 (selenium-binding protein 1) F:selenium binding;P:response to cadmium ion;C:cellular_component unknown;OMBPA C.G. S.X.
0.50 1e-36 155 At4g14040 827040 SBP2 (SELENIUM-BINDING PROTEIN 2) F:selenium binding;P:polar nucleus fusion;C:cellular_component unknown;OMBPA C.G. S.X.
0.01 2e-1 38 At5g02030 831745 RPL (REPLUMLESS) Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP. C.G. S.X.
0.01 7e-1 36 At5g60040 836126 NRPC1 Encodes a subunit of RNA polymerase III (aka RNA polymerase C). C.G. S.X.
0.01 7e-1 36 At4g07350 826165 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 7e-1 36 At3g13820 820594 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 3e+0 34 At5g67630 836899 DNA helicase, putative F:DNA helicase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:nucleolus, chloroplast;BMOFPA C.G. S.X.
0.01 3e+0 34 At3g27180 822337 unknown protein F:unknown;P:unknown;C:chloroplast;BOMPAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.35 8e-17 89 Glycine max Gma.6299.3.S1_at BU547701 - - 6e-17 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.11 4e-13 75 Hordeum vulgare Contig2837_at Contig2837 - - 1e-12 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.16 4e-7 57 Oryza sativa Os01g0916400 AY187678.1 - Selenium binding protein 1e-6 At4g14040 SBP2 (SELENIUM-BINDING PROTEIN 2) C.G. S.X.
0.32 3e-16 87 Populus trichocarpa PtpAffx.14425.2.S1_at CF228670 hypothetical protein - 1e-16 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.02 2e-1 38 Triticum aestivum TaAffx.12270.1.A1_at BJ276017 - - 7e-2 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.11 4e-15 81 Vitis vinifera 1618892_at CF200898.1 - - 2e-9 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
0.18 4e-19 95 Zea mays Zm.7068.1.A1_at CD433030 hypothetical protein LOC100192654 - 1e-18 At3g23800 SBP3 (selenium-binding protein 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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