CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23770

Gene name glycosyl hydrolase family 17 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g23770 821959 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO S.X. H.G.
0.97 97.6 At1g62940 842596 ACOS5 (ACYL-COA SYNTHETASE 5) encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile. S.X. H.G.
0.97 97.6 At3g13220 820512 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPV S.X. H.G.
0.94 96.7 At1g02050 839280 chalcone and stilbene synthase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity;P:phenylpropanoid biosynthetic process, pollen exine formation;C:unknown;PBOF S.X. H.G.
0.94 96.7 At3g07450 819933 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.92 96.0 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO S.X. H.G.
0.92 96.0 At4g20420 827790 tapetum-specific protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.91 95.6 At3g52130 824377 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.91 95.6 At1g69500 843283 electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen binding F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAV S.X. H.G.
0.91 95.6 At3g42960 823352 ATA1 (ARABIDOPSIS TAPETUM 1) Arabidopsis homolog of TASSELSEED2. Expressed specifically in tapetal cells. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
410.1 100.0 GSM131578 ATGE_31_C2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
334.9 100.0 GSM131577 ATGE_31_B2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
325.7 100.0 GSM131576 ATGE_31_A2 GSE5632 AtGenExpress: Developmental series (flowers and pollen)
291.4 100.0 E-MEXP-1592-raw-cel-1617526984
181.1 100.0 E-MEXP-1592-raw-cel-1617526848
170.7 100.0 E-MEXP-1592-raw-cel-1617526816
162.1 99.9 E-MEXP-1592-raw-cel-1617526824
142.3 99.9 E-MEXP-1592-raw-cel-1617526976
117.0 99.9 GSM27363 lec1-1 Floral Bud GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
114.7 99.9 E-MEXP-1592-raw-cel-1617526952
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.56 1e-61 238 At4g14080 827044 MEE48 (maternal effect embryo arrest 48) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;PO C.G. S.X.
0.02 5e-5 50 At5g42100 834215 ATBG_PAP encodes a plasmodesmal (Pd)-associated membrane protein involved in plasmodesmal callose degradation, i.e. beta-1,3-glucanase (EC 3.2.1.39), and functions in the gating of Pd C.G. S.X.
0.01 4e-2 40 At4g18540 827586 unknown protein F:unknown;P:biological_process unknown;C:unknown;FPBM C.G. S.X.
0.02 4e-2 40 At2g32510 817812 MAPKKK17 member of MEKK subfamily C.G. S.X.
0.03 4e-2 40 At2g39640 818547 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFO C.G. S.X.
0.01 2e-1 38 At1g50280 841450 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P C.G. S.X.
0.01 7e-1 36 At5g25070 832578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 7e-1 36 At4g02110 828135 transcription coactivator F:transcription coactivator activity;P:biological_process unknown;C:intracellular;MOBFPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.60584.1.S1_at BQ613024 - - 8e-1 At5g25140 CYP71B13 C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig18136_at Contig18136 - - 2e-5 At2g29130 LAC2 (laccase 2) C.G. S.X.
0.02 6e+0 34 Oryza sativa OsAffx.31679.1.S1_at - - - 0 C.G. S.X.
0.03 6e-2 40 Populus trichocarpa PtpAffx.24447.1.A1_at CV259247 hypothetical protein - 2e-2 At3g23770 glycosyl hydrolase family 17 protein C.G. S.X.
0.02 3e+0 34 Triticum aestivum TaAffx.39325.1.A1_at BG909140 - - 3e+0 At4g30050 unknown protein C.G. S.X.
0.02 5e-2 38 Vitis vinifera 1611727_at CB912607 - - 5e+0 At5g26667 PYR6 C.G. S.X.
0.02 3e-1 36 Zea mays ZmAffx.355.1.A1_at AI670542 - - 3e+0 At1g77890 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00436 Callose/glucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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