CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23640

Gene name HGL1 (heteroglycan glucosidase 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g23640 821944 HGL1 (heteroglycan glucosidase 1) F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:chloroplast;BMFOPA S.X. H.G.
0.14 6.8 At1g48050 841223 KU80 Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation. S.X. H.G.
0.13 5.8 At5g43820 834404 - F:unknown;P:biological_process unknown;C:unknown;POFMB S.X. H.G.
0.10 3.4 At3g48190 823975 ATM (ATAXIA-TELANGIECTASIA MUTATED) encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. S.X. H.G.
0.02 0.4 At3g61860 825359 RSP31 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
220.4 100.0 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
78.7 99.9 GSM133759 Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
77.7 99.9 GSM133775 Lindsey_1-27_torpedo-meristem_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.9 99.7 GSM133770 Lindsey_1-22_torpedo-apical_Rep4_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.5 99.7 GSM284387 Arabidopsis GSUS4b GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
21.1 99.6 GSM142634 MC002_ATH1_A4.3-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.6 99.6 GSM142633 MC002_ATH1_A4.2-dubos-6kc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
20.5 99.6 GSM142628 MC002_ATH1_A2.3-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.1 99.5 GSM142626 MC002_ATH1_A2.1-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
18.0 99.5 GSM142627 MC002_ATH1_A2.2-dubos-wtc GSE6151 The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 1e-1 40 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV C.G. S.X.
0.01 4e-1 38 At1g29380 839813 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVA C.G. S.X.
0.01 2e+0 36 At5g65200 836643 PUB38 (PLANT U-BOX 38) Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays. C.G. S.X.
0.01 2e+0 36 At4g00230 827949 XSP1 (xylem serine peptidase 1) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:cell wall, plant-type cell wall;BPOFMA C.G. S.X.
0.01 2e+0 36 At3g61150 825287 HDG1 (HOMEODOMAIN GLABROUS 1) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. C.G. S.X.
0.01 2e+0 36 At2g43840 818988 UDP-glucoronosyl/UDP-glucosyl transferase family protein UGT74F1 shows a weak ability to catalyze the formation of the p-aminobenzoate-glucose ester in vitro. But, UGT75B1 appears to be the dominant pABA acylglucosyltransferase in vivo based on assays in leaves, flowers, and siliques. C.G. S.X.
0.01 2e+0 36 At2g35155 818082 catalytic F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 36 Glycine max Gma.4523.1.S1_at CA799910 - - 2e-1 At3g23640 HGL1 (heteroglycan glucosidase 1) C.G. S.X.
0.01 3e+0 34 Hordeum vulgare Contig23215_at Contig23215 - - 9e-1 At5g14740 CA2 (CARBONIC ANHYDRASE 2) C.G. S.X.
Os07g0420700 0.17 9e-16 Oryza sativa Os02g0274100 AF442962.1 - 3-2-trans-enoyl-CoA isomerase (EC 5.3.3.8) 2e-9 At4g29010 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) C.G. S.X.
0.44 1e-88 329 Populus trichocarpa PtpAffx.220115.1.S1_at pmrna36450 hypothetical protein - 7e-89 At3g23640 HGL1 (heteroglycan glucosidase 1) C.G. S.X.
0.04 2e-6 56 Triticum aestivum TaAffx.94033.1.S1_at CK162983 - - 3e-7 At3g23640 HGL1 (heteroglycan glucosidase 1) C.G. S.X.
0.12 2e-9 63 Vitis vinifera 1618863_at CF208339 hypothetical protein LOC100254505 - 3e-9 At3g23640 HGL1 (heteroglycan glucosidase 1) C.G. S.X.
0.04 4e-5 50 Zea mays Zm.4161.1.A1_at AY104817.1 - - 6e-5 At3g23640 HGL1 (heteroglycan glucosidase 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase
00438 Xyloglucan degradation

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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