CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23400

Gene name plastid-lipid associated protein PAP / fibrillin family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g23400 821921 plastid-lipid associated protein PAP / fibrillin family protein F:structural molecule activity, transporter activity, binding;P:transport;C:in 8 components;PBO S.X. H.G.
0.74 86.1 At5g03880 831679 electron carrier F:electron carrier activity;P:cell redox homeostasis;C:chloroplast thylakoid membrane, chloroplast;BOPAFM S.X. H.G.
0.71 84.2 At1g76730 844007 5-formyltetrahydrofolate cyclo-ligase family protein F:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPF S.X. H.G.
0.68 82.2 At5g38660 833856 APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT) mutant has Altered acclimation responses; S.X. H.G.
0.67 81.6 At3g27925 822416 DEGP1 (DegP protease 1) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. S.X. H.G.
0.65 79.6 At5g14970 831349 unknown protein F:unknown;P:unknown;C:unknown;BOP S.X. H.G.
0.63 78.1 At2g01110 814640 APG2 (ALBINO AND PALE GREEN 2) mutant is Albino and pale green; Chloroplast Protein Translocation (tatC). Core subunit of the chloroplast Tat translocase. Integral chloroplast thylakoid membrane protein. S.X. H.G.
0.60 75.7 At1g54520 841894 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM S.X. H.G.
0.59 74.7 At1g68660 843196 - F:molecular_function unknown;P:protein catabolic process;C:unknown;BOP S.X. H.G.
0.57 73.8 At2g27290 817272 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
8.9 99.0 E-MEXP-449-raw-cel-676422999
8.2 99.0 E-MEXP-285-raw-cel-440782853
7.9 98.9 E-MEXP-285-raw-cel-440782938
7.6 98.9 GSM170911 abh1 +ABA repl1 GSE7112 Abscisic acid effect on wild type and the abh1 mutant
7.6 98.9 E-MEXP-449-raw-cel-676423187
7.1 98.8 GSM133783 Brueggemann_A-1-Brueg-uvb_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
7.0 98.7 GSM157312 Hammond_3-2_Potassium-starved-shoot_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
6.9 98.7 GSM131121 AtGen_B-7_1-7-1_REP_1_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
6.9 98.7 E-MEXP-449-raw-cel-676423362
6.9 98.7 GSM264763 Tween 0.1% 4h GSE10464 Expression data from Arabidopsis thaliana (Ler) rosette leaves treated with paraquat (methyl viologen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At2g02790 814808 IQD29 (IQ-domain 29) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOFPBVA C.G. S.X.
0.03 4e-1 36 At3g06840 819868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.03 4e-1 36 At3g22530 821824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P C.G. S.X.
0.01 4e-1 36 At3g26280 822231 CYP71B4 cytochrome P450 monooxygenase C.G. S.X.
0.02 4e-1 36 At1g21600 838761 PTAC6 (PLASTID TRANSCRIPTIONALLY ACTIVE6) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. C.G. S.X.
0.01 2e+0 34 At5g65450 836670 UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17) Encodes a ubiquitin-specific protease. C.G. S.X.
0.01 2e+0 34 At5g56010 835699 HSP81-3 a member of heat shock protein 90 (HSP90) gene family. Expressed in all tissues and abundant in root apical meristem, pollen and tapetum. Expression is NOT heat-induced but induced by IAA and NaCl. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max Gma.13304.1.A1_at CD392606 - - 4e-6 At1g68870 unknown protein C.G. S.X.
0.03 2e-1 36 Hordeum vulgare Contig25150_at Contig25150 - - 3e-1 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.04 5e-2 40 Oryza sativa Os11g0595200 AK106159.1 - PAP fibrillin family protein 4e-2 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.16 6e-4 46 Populus trichocarpa Ptp.5883.1.S1_at CV231755 hypothetical protein - 6e-4 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.03 7e+0 32 Triticum aestivum TaAffx.51965.1.S1_at CA715679 - - 2e-1 At4g33960 unknown protein C.G. S.X.
0.14 4e-14 77 Vitis vinifera 1607276_at CF202469.1 - - 1e-13 At3g23400 plastid-lipid associated protein PAP / fibrillin family protein C.G. S.X.
0.03 3e+0 32 Zea mays Zm.4795.2.A1_x_at AI740164 - - 2e-1 At4g28703 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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