CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23250

Gene name MYB15 (MYB DOMAIN PROTEIN 15)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.84 91.9 At3g23250 821904 MYB15 (MYB DOMAIN PROTEIN 15) Member of the R2R3 factor gene family. S.X. H.G.
0.84 91.9 At1g22810 838887 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. S.X. H.G.
0.84 91.9 At5g12340 831109 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.83 91.4 At2g14290 815916 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB S.X. H.G.
0.82 90.9 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) S.X. H.G.
0.82 90.9 At1g30370 839917 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:unknown;PBOFMV S.X. H.G.
0.81 90.4 At2g37430 818319 zinc finger (C2H2 type) family protein (ZAT11) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:response to chitin, regulation of transcription;C:intracellular;MPOF S.X. H.G.
0.80 89.8 At4g26200 828726 ACS7 Member of a family of proteins in Arabidopsis that encode 1-Amino-cyclopropane-1-carboxylate synthase, an enzyme involved in ethylene biosynthesis. Not expressed in response to IAA. S.X. H.G.
0.80 89.8 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM S.X. H.G.
0.79 89.1 At1g69930 843329 ATGSTU11 (GLUTATHIONE S-TRANSFERASE TAU 11) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
241.1 100.0 E-MEXP-807-raw-cel-1173273060
213.9 100.0 E-MEXP-807-raw-cel-1173273116
185.8 100.0 E-MEXP-807-raw-cel-1173273088
184.3 100.0 E-MEXP-807-raw-cel-1173273223
160.8 99.9 E-MEXP-807-raw-cel-1173273144
159.2 99.9 E-MEXP-807-raw-cel-1173273252
132.7 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
128.5 99.9 E-MEXP-807-raw-cel-1173273170
121.5 99.9 E-MEXP-807-raw-cel-1173273196
121.1 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.21 3e-23 109 At2g31180 817674 MYB14 (MYB DOMAIN PROTEIN 14) Member of the R2R3 factor gene family. C.G. S.X.
0.20 5e-13 75 At1g06180 837127 ATMYB13 (MYB DOMAIN PROTEIN 13) member of MYB3R- and R2R3- type MYB- encoding genes C.G. S.X.
0.10 2e-9 63 At5g49330 834993 AtMYB111 (myb domain protein 111) Member of the R2R3 factor gene family. C.G. S.X.
0.13 2e-9 63 At3g61250 825297 AtMYB17 (myb domain protein 17) Member of the R2R3 factor gene family. C.G. S.X.
0.06 2e-9 63 At1g08810 837403 MYB60 (myb domain protein 60) putative transcription factor of the R2R3-MYB gene family. Transcript increases under conditions that promote stomatal opening (white and blue light, abi1-1 mutation) and decreases under conditions that trigger stomatal closure (ABA, desiccation, darkness), with the exception of elevated CO2. Expressed exclusively in guard cells of all tissues. It is required for light-induced opening of stomata. Mutant shows reduced stomatal aperture which helps to limit water loss during drought. C.G. S.X.
0.07 3e-8 59 At5g35550 833520 TT2 (TRANSPARENT TESTA 2) TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. C.G. S.X.
0.09 3e-8 59 At3g47600 823914 ATMYB94 (MYB DOMAIN PROTEIN 94) Encodes a putative transcription factor (MYB94). C.G. S.X.
0.03 2e-6 54 At1g18570 838438 MYB51 (MYB DOMAIN PROTEIN 51) Encodes a member of the R2R3-MYB transcription family. Involved in indole glucosinolate biosynthesis. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-4 48 Glycine max GmaAffx.57525.1.S1_x_at AW831457 GmMYB29 protein - 3e-16 At2g31180 MYB14 (MYB DOMAIN PROTEIN 14) C.G. S.X.
0.07 1e-5 50 Hordeum vulgare Contig5842_s_at Contig5842 - - 8e-6 At3g12820 AtMYB10 (myb domain protein 10) C.G. S.X.
0.10 1e-5 52 Oryza sativa Os02g0624300 AK112056.1 - MYB1 protein 9e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.43 1e-17 91 Populus trichocarpa PtpAffx.224933.1.S1_at pmrna43867 hypothetical protein - 3e-18 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.09 2e-6 54 Triticum aestivum Ta.5405.1.S1_x_at BJ282389 - - 2e-6 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
0.12 1e-1 36 Vitis vinifera 1619579_at AB073014.1 - - 4e-13 At1g22640 MYB3 (MYB DOMAIN PROTEIN 3) C.G. S.X.
0.11 2e-4 46 Zea mays Zm.11694.1.S1_at CK369414 R2R3MYB-domain protein - 3e-4 At3g23250 MYB15 (MYB DOMAIN PROTEIN 15) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
X GO:0009723 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus.
X GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0046686 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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