CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23190

Gene name lesion inducing protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g23190 821897 lesion inducing protein-related F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;P S.X. H.G.
0.80 89.8 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.73 85.5 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.57 73.8 At1g29020 839776 calcium-binding EF hand family protein F:calcium ion binding;P:unknown;C:endomembrane system;PMOAF S.X. H.G.
0.50 65.3 At3g27070 822325 TOM20-1 (translocase outer membrane 20-1) Form of TOM20, which is a component of the TOM complex, involved in transport of nuclear-encoded mitochondrial proteins S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
168.4 100.0 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
121.3 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
115.1 99.9 GSM184489 Epidermis&Cortex root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
107.7 99.9 GSM184535 Protoplasted root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.2 99.9 GSM184493 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
98.7 99.9 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
96.8 99.9 GSM218590 Protoplasted root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
81.1 99.9 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
79.7 99.9 GSM184533 Protoplasted root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
78.5 99.9 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-1 36 At1g49870 841410 - F:unknown;P:unknown;C:chloroplast;MOBFPAV C.G. S.X.
0.02 3e-1 36 At1g55680 842017 WD-40 repeat family protein F:molecular_function unknown;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;BMFOPA C.G. S.X.
0.01 1e+0 34 At4g29380 829059 protein kinase family protein / WD-40 repeat family protein F:protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:CUL4 RING ubiquitin ligase complex;MOFPBVA C.G. S.X.
0.02 1e+0 34 At1g68270 843156 AMP-dependent synthetase and ligase family protein F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.02 1e+0 34 At1g65880 842900 BZO1 (BENZOYLOXYGLUCOSINOLATE 1) Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds. C.G. S.X.
0.02 1e+0 34 At1g65890 842901 AAE12 (ACYL ACTIVATING ENZYME 12) F:catalytic activity;P:metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.01 5e+0 32 At5g45240 834560 transmembrane receptor F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e+0 32 Glycine max GmaAffx.78947.1.A1_at BU550997 - - 6e+0 At5g67411 - C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig18572_at Contig18572 - - 6e-5 At4g33660 unknown protein C.G. S.X.
0.03 1e+1 32 Oryza sativa OsAffx.9072.1.S1_at - - - 0 C.G. S.X.
0.04 2e+0 34 Populus trichocarpa PtpAffx.219654.1.S1_s_at pmrna35618 hypothetical protein - 8e-1 At3g23190 lesion inducing protein-related C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.23695.1.S1_at CA731682 - - 1e+0 At1g23860 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21) C.G. S.X.
0.03 4e-1 34 Vitis vinifera 1608218_at CF212331 - - 3e-7 At4g30940 potassium channel tetramerisation domain-containing protein C.G. S.X.
0.03 1e-1 36 Zea mays Zm.3799.1.A1_at CK367871 hypothetical protein LOC100192947 - 3e-1 At2g03310 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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