CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g23050

Gene name IAA7 (INDOLE-3-ACETIC ACID 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g23050 821879 IAA7 (INDOLE-3-ACETIC ACID 7) Transcription regulator acting as repressor of auxin-inducible gene expression. Plays role in the control of gravitropic growth and development in light-grown seedlings. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. S.X. H.G.
0.29 30.3 At1g01120 839395 KCS1 (3-KETOACYL-COA SYNTHASE 1) Encodes a condensing enzyme KCS1 (3-ketoacyl-CoA synthase 1) which is involved in the critical fatty acid elongation process in wax biosynthesis. S.X. H.G.
0.29 30.3 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene S.X. H.G.
0.25 22.6 At4g38690 830025 1-phosphatidylinositol phosphodiesterase-related F:phospholipase C activity, phosphoric diester hydrolase activity;P:intracellular signaling cascade, N-terminal protein myristoylation, lipid metabolic process;C:cellular_component unknown;BFMPO S.X. H.G.
0.09 2.8 At1g68530 843182 KCS6 (3-KETOACYL-COA SYNTHASE 6) Encodes KCS6, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
34.6 99.7 GSM292081 pif1-2, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
30.5 99.7 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
29.2 99.7 GSM292080 pif1-2, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
27.6 99.7 GSM292077 Wt, dark sample, biological rep2 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
25.6 99.7 GSM292079 pif1-2, dark sample, biological rep1 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
25.4 99.6 GSM292078 Wt, dark sample, biological rep3 GSE11594 Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings
24.8 99.6 E-MEXP-715-raw-cel-1121835979
23.9 99.6 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
23.7 99.6 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
22.9 99.6 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.71 2e-101 369 At4g14550 827102 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) IAA14 is a member of the Aux/IAA protein family. Involved in lateral root development. Gain of function mutation decreases auxin-inducible gene expression. Protein is localized to the nucleus. Expressed in stele and root tip epidermis. Functions as a negative regulator of ARF7/19. C.G. S.X.
0.28 5e-19 95 At3g04730 819633 IAA16 early auxin-induced (IAA16) C.G. S.X.
0.36 4e-10 65 At1g04250 839568 AXR3 (AUXIN RESISTANT 3) Transcription regulator acting as repressor of auxin-inducible gene expression. Auxin-inducible AUX/IAA gene. Short-lived nuclear protein with four conserved domains. Domain III has homology to beta alpha alpha dimerization and DNA binding domains. Involved in auxin signaling. Auxin induces the degradation of the protein in a dosage-dependent manner in a process mediated by AtRac1. Auxin induced the relocalization of the protein within the nucleus from a diffused nucleoplasmic pattern to a discrete particulated pattern named nuclear protein bodies or NPB in a process also mediated by Rac1. Colocalizes with SCF, CSN and 26S proteasome components. C.G. S.X.
0.07 2e-8 59 At1g04240 839570 SHY2 (SHORT HYPOCOTYL 2) SHY2/IAA3 regulates multiple auxin responses in roots. It is induced rapidly by IAA, and has been shown to be phosphorylated by oat phytochrome A in vitro. C.G. S.X.
0.11 1e-7 57 At5g43700 834390 ATAUX2-11 (AUXIN INDUCIBLE 2-11) Auxin inducible protein similar to transcription factors. C.G. S.X.
0.08 4e-7 56 At3g23030 821877 IAA2 (INDOLE-3-ACETIC ACID INDUCIBLE 2) auxin inducible gene expressed in the nucleus C.G. S.X.
0.11 2e-6 54 At5g65670 836693 IAA9 (INDOLE-3-ACETIC ACID INDUCIBLE 9) auxin (indole-3-acetic acid) induced gene C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.45 7e-59 228 Glycine max GmaAffx.93321.1.S1_x_at CF809046 - - 2e-69 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.10 3e-6 52 Hordeum vulgare Contig322_at Contig322 - - 1e-5 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) C.G. S.X.
0.17 2e-19 97 Oryza sativa Os03g0742900 AK059838.1 - AUX/IAA protein family protein 2e-19 At3g23050 IAA7 (INDOLE-3-ACETIC ACID 7) C.G. S.X.
0.32 7e-25 115 Populus trichocarpa PtpAffx.201688.1.S1_at pmrna3365 hypothetical protein - 1e-23 At3g04730 IAA16 C.G. S.X.
0.14 2e-12 73 Triticum aestivum Ta.18018.1.S1_at CA627383 - - 1e-9 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) C.G. S.X.
0.32 1e-35 149 Vitis vinifera 1619741_at CB339880 hypothetical protein LOC100259693 - 4e-50 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
0.11 2e-16 85 Zea mays Zm.3607.1.A1_at AW017627 IAA30 - auxin-responsive Aux/IAA family member - 1e-14 At4g14550 IAA14 (INDOLE-3-ACETIC ACID INDUCIBLE 14) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009414 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water.
X GO:0009611 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism.
X GO:0009753 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus.
X GO:0009630 The orientation of plant parts under the stimulation of gravity.
S GO:0009733 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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