CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g22930

Gene name calmodulin, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.27 26.2 At3g22930 821865 calmodulin, putative F:calcium ion binding;P:biological_process unknown;C:unknown;MOFPBV S.X. H.G.
0.46 59.8 At2g43140 818916 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOBF S.X. H.G.
0.44 57.2 At1g08430 837363 ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1) Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited). S.X. H.G.
0.23 19.3 At2g02680 814797 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:intracellular;PMOF S.X. H.G.
0.22 17.5 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I S.X. H.G.
0.18 11.4 At2g41380 818736 embryo-abundant protein-related F:methyltransferase activity;P:response to cadmium ion;C:mitochondrion;BPFOMA S.X. H.G.
0.17 10.2 At2g44450 819052 BGLU15 (BETA GLUCOSIDASE 15) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cell wall, plant-type cell wall;BOPMFA S.X. H.G.
0.08 2.3 At1g36920 840600 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
270.9 100.0 GSM142905 WW002_ATH1_A1-willa-CON-REP3 GSE6181 Assembly of the cell wall pectic matrix.
265.1 100.0 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
240.1 100.0 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
238.5 100.0 GSM142906 WW002_ATH1_A2-willa-ISOX-REP2 GSE6181 Assembly of the cell wall pectic matrix.
210.2 100.0 GSM142907 WW002_ATH1_A2-willa-ISOX-REP3 GSE6181 Assembly of the cell wall pectic matrix.
173.3 100.0 GSM131281 AtGen_6-1621_Cold(4°C)-Roots-24.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
157.9 99.9 E-ATMX-31-raw-cel-1516947916
125.5 99.9 GSM131277 AtGen_6-1521_Cold(4°C)-Roots-12.0h_Rep1 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
122.2 99.9 GSM131282 AtGen_6-1622_Cold(4°C)-Roots-24.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
92.6 99.9 GSM131278 AtGen_6-1522_Cold(4°C)-Roots-12.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.73 2e-116 418 At4g14640 827114 CAM8 (CALMODULIN 8) encodes a divergent member of calmodulin, which is an EF-hand family of Ca2+-binding proteins. This gene is expressed in leaves, flowers and siliques. The gene functionally complements yeast calmodulin 1 (CAM1). Also the protein does not form formed a complex with a basic amphiphilic helical peptide in the presence of Ca2+ in vitro. Authors suggest that this gene may represent a Ca2+-binding sensor protein that interacts with a more limited set of target proteins than do more conventional CaM isoforms. C.G. S.X.
0.29 4e-9 61 At2g41110 818710 CAM2 (CALMODULIN 2) Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. C.G. S.X.
0.28 7e-8 57 At5g37780 833756 CAM1 (CALMODULIN 1) encodes a calmodulin that is involved in thigmomorphogenesis. Gene expression is rapidly induced upon a variety of abiotic stimuli, including water spray, subirrigation, wind, touch, wounding, or darkness. C.G. S.X.
0.13 2e-5 50 At1g66410 842959 CAM4 (calmodulin 4) encodes a calmodulin C.G. S.X.
0.19 3e-4 46 At3g56800 824847 CAM3 (CALMODULIN 3) encodes a calmodulin C.G. S.X.
0.27 4e-3 42 At3g43810 823492 CAM7 (CALMODULIN 7) EF hand domain protein encodes a calmodulin. Can functionally complement a yeast CaM mutant. C.G. S.X.
0.09 4e-3 42 At2g27030 817245 CAM5 (CALMODULIN 5) encodes a calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. C.G. S.X.
0.02 2e-2 40 At2g40120 818603 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytoplasm;MOPFBVA C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.40 4e-35 149 Glycine max Gma.17842.1.S1_s_at BI968693 calmodulin - 4e-35 At3g22930 calmodulin, putative C.G. S.X.
0.09 8e-3 40 Hordeum vulgare Contig1330_at Contig1330 - - 2e-95 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.13 3e-2 40 Oryza sativa Os07g0687200 AF441191.1 - Calmodulin (CaM) (BC329) 2e-108 At5g37780 CAM1 (CALMODULIN 1) C.G. S.X.
0.42 2e-24 113 Populus trichocarpa PtpAffx.24491.2.S1_at CV273830 hypothetical protein - 5e-22 At4g14640 CAM8 (CALMODULIN 8) C.G. S.X.
0.12 2e-2 40 Triticum aestivum Ta.2228.1.S1_a_at U48692.1 calmodulin TaCaM2-2 /// calmodulin TaCaM2-3 /// calmodulin TaCaM2-1 - 5e-103 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
0.46 5e-40 163 Vitis vinifera 1620074_at CD713563 hypothetical protein LOC100244152 - 2e-39 At3g22930 calmodulin, putative C.G. S.X.
0.14 7e-3 40 Zea mays Zm.3864.1.A1_at AY106452.1 calmodulin2 - 8e-80 At3g56800 CAM3 (CALMODULIN 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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