Gene omics information

Query gene ID At3g22900
Gene name NRPD7
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3338.1At3g22900821862NRPD7Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7S.X.H.G.
0.2319.3At2g39120818498ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;PS.X.H.G.
0.061.4At3g61360825308pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POFMBAS.X.H.G.
0.040.9At3g26750822288unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.030.6At3g58530825022F-box family protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
105.999.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
88.999.9GSM133767Lindsey_1-19_torpedo-basal_Rep4_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
84.899.9GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
43.299.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.399.7GSM133772Lindsey_1-24_torpedo-apical_Rep6_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
32.999.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.399.7GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
31.299.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
31.099.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
30.599.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.081e-654At4g14660827116NRPE7Non-catalytic subunit specific to DNA-directed RNA polymerase V; homologous to budding yeast RPB7C.G.S.X.
0.046e-238At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMC.G.S.X.
0.031e+034At5g03530831810RABC2A (RAB GTPASE HOMOLOG C2A)Encodes a member of the Rab GTPase family of proteins. This protein interacts with the tail region of a myosin XI protein (AT5G43900) in a GTP-dependent manner. CFP:RabC2a appears to co-localize with peroxisomes.C.G.S.X.
0.021e+034At5g08160830712ATPK3Encodes a serine/threonine protein kinase.C.G.S.X.
0.021e+034At3g19990821537unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;PBOC.G.S.X.
0.011e+034At3g48200823977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOPC.G.S.X.
0.021e+034At1g23880838999NHL repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOPMAC.G.S.X.
0.021e+034At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e+032Glycine maxGmaAffx.55917.2.A1_atAW350642--3e+0At3g58550protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinC.G.S.X.
0.022e+032Hordeum vulgareContig2777_atContig2777--7e-93At1g0836060S ribosomal protein L10A (RPL10aA)C.G.S.X.
0.032e+034Oryza sativaOs07g0217000NM_186553.1--2e-2At5g28630glycine-rich proteinC.G.S.X.
0.031e+034Populus trichocarpaPtpAffx.210517.1.S1_atpmrna20625hypothetical protein-1e+0At3g22900NRPD7C.G.S.X.
0.042e+130Triticum aestivumTaAffx.97463.1.A1_atBQ169119--2e+0At4g33130-C.G.S.X.
0.041e+032Vitis vinifera1611914_atBQ796358hypothetical protein LOC100261398-2e+0At4g14660NRPE7C.G.S.X.
0.047e+030Zea maysZmAffx.273.1.S1_atAI670401--1e+1At3g22900NRPD7C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006350The synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00230Link to KEGG PATHWAYPurine metabolism
00240Link to KEGG PATHWAYPyrimidine metabolism
01100Link to KEGG PATHWAYMetabolic pathways
03020Link to KEGG PATHWAYRNA polymerase
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