CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g22830

Gene name AT-HSFA6B

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g22830 821854 AT-HSFA6B member of Heat Stress Transcription Factor (Hsf) family S.X. H.G.
0.48 62.5 At4g37710 829927 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.38 46.7 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.36 43.6 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
0.35 41.6 At5g19110 832031 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis, N-terminal protein myristoylation;C:endomembrane system;P S.X. H.G.
0.33 38.1 At3g63060 825481 EDL3 (EID1-like 3) F:unknown;P:unknown;C:unknown;P S.X. H.G.
0.31 33.8 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.24 20.7 At1g05100 839324 MAPKKK18 member of MEKK subfamily S.X. H.G.
0.22 17.5 At5g55090 835600 MAPKKK15 member of MEKK subfamily S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
272.4 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
223.7 100.0 GSM184918 Arabidopsis, root cells, endodermis and quiescent center, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
216.5 100.0 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
190.6 100.0 GSM131325 AtGen_6-3521_Saltstress-Roots-12.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
182.5 100.0 GSM184919 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
138.2 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
122.7 99.9 GSM184921 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
120.8 99.9 GSM131274 AtGen_6-1422_Cold(4°C)-Roots-6.0h_Rep2 GSE5621 AtGenExpress: Stress Treatments (Cold stress)
116.1 99.9 GSM184898 Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
112.6 99.9 GSM184920 Arabidopsis, root cells, stele, 140 mM NaCls, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 3e-18 93 At4g18880 827622 AT-HSFA4A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.08 1e-11 71 At5g54070 835493 AT-HSFA9 A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation. C.G. S.X.
0.07 1e-11 71 At3g02990 821162 ATHSFA1E member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.07 4e-11 69 At5g16820 831545 HSF3 (HEAT SHOCK FACTOR 3) Encodes a putative transcription factor whose expression is not induced by heat but whose stable overexpression leads to expression of HSP. Required early in the stress response for transient expression of heat shock genes. C.G. S.X.
0.14 1e-8 61 At2g26150 817155 ATHSFA2 member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. C.G. S.X.
0.12 4e-8 59 At3g51910 824354 AT-HSFA7A member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.05 2e-7 57 At3g63350 825510 AT-HSFA7B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.06 6e-7 56 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.09 9e-7 56 Glycine max GmaAffx.16473.5.S1_x_at BI471764 - - 1e-24 At3g02990 ATHSFA1E C.G. S.X.
0.06 4e-19 95 Hordeum vulgare Contig6968_at Contig6968 - - 8e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.08 6e-21 103 Oryza sativa Os10g0419300 AY344488.1 - Heat shock factor protein 1 (HSF 1) (Heat shocktranscription factor 1) (HSTF 1) 3e-12 At5g16820 HSF3 (HEAT SHOCK FACTOR 3) C.G. S.X.
0.21 3e-16 87 Populus trichocarpa PtpAffx.208751.1.S1_at pmrna17351 hypothetical protein - 9e-17 At3g22830 AT-HSFA6B C.G. S.X.
0.06 8e-19 95 Triticum aestivum TaAffx.95561.1.S1_at CA657041 - - 7e-19 At3g22830 AT-HSFA6B C.G. S.X.
0.12 3e-31 135 Vitis vinifera 1610122_at CF517531 - - 4e-24 At2g26150 ATHSFA2 C.G. S.X.
0.06 8e-17 87 Zea mays Zm.12327.1.A1_at BM380919 hypothetical protein LOC100279662 - 5e-11 At3g02990 ATHSFA1E C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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