Gene omics information

Query gene ID At3g22800
Gene name leucine-rich repeat family protein / extensin family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At3g22800821851leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MPBOFVAS.X.H.G.
0.7788.0At3g24290822017AMT1F:ammonium transmembrane transporter activity;P:ammonium transport, transport;C:endomembrane system, membrane;OBMFPAS.X.H.G.
0.7385.5At1g31885840079transporterF:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAVS.X.H.G.
0.7385.5At5g43520834372DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFS.X.H.G.
0.6982.9At1g78000844135SULTR1Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes.S.X.H.G.
0.6680.1At2g29995817550unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6579.6At1g49310841354unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6478.9At5g43350834353PHT1Encodes an inorganic phosphate transporter. Mutants display enhanced arsenic accumulation.S.X.H.G.
0.6378.1At3g54040824571photoassimilate-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.6176.7At3g13760820585DC1 domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:membrane;PMOS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
182.5100.0E-MEXP-828-raw-cel-1156922342
140.799.9GSM157306Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
130.499.9GSM133892Schroeder_1-6_JS43-control-96h_Rep1_ATH1GSE5744Response to potassium starvation in roots
102.999.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
94.599.9GSM133894Schroeder_1-12_JS44-starve-96h_Rep1_ATH1GSE5744Response to potassium starvation in roots
90.499.9GSM157324Hammond_3-17_Potassium-starved-root_Rep3_ATH1GSE6825Differential gene expression patterns in potassium-starved and Caesium-treated plants
83.299.9E-MEXP-828-raw-cel-1156922416
80.099.9E-MEXP-828-raw-cel-1156922368
79.099.9GSM157305Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1GSE6824Identification of genes involved in nutritional regulation of root architecture
73.499.9E-MEXP-828-raw-cel-1156922595
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.035e-550At5g25550832630leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAC.G.S.X.
0.013e-344At4g13340826964leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;MBPOFVAC.G.S.X.
0.033e-344At3g24480822038leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:cell wall, plant-type cell wall;PMOBFVAC.G.S.X.
0.013e-344At1g49490841373leucine-rich repeat family protein / extensin family proteinF:structural constituent of cell wall, protein binding;P:unknown;C:endomembrane system;MBPOFVAC.G.S.X.
0.014e-240At3g16270820873-F:unknown;P:intracellular protein transport;C:membrane;MOPBFC.G.S.X.
0.014e-240At1g642552745850SWIM zinc finger family proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POC.G.S.X.
0.022e-138At5g62210836342embryo-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPOFVBAC.G.S.X.
0.022e-138At4g31580829285SRZ-22Encodes a Serine/arginine-rich (SR) protein RSZp22. SR proteins are splicing regulators that share a modular structure consisting of one or two N-terminal RNA recognition motif domains and a C-terminal RS-rich domain. RSZp22 is located in the nucleolus. It is a nucleocytoplasmic shuttling protein and an interacting partner to the Arabidopsis U1-70K.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-240Glycine maxGmaAffx.65716.1.A1_x_atCA853286--5e-5At5g35190proline-rich extensin-like family proteinC.G.S.X.
0.032e-240Hordeum vulgareHM10K10r_atHM10K10r--2e-2At3g10185-C.G.S.X.
0.054e-448Oryza sativaOs06g03262009634.m02161--2e-2At4g08230glycine-rich proteinC.G.S.X.
0.102e-242Populus trichocarpaPtpAffx.208755.1.S1_atpmrna17361hypothetical protein-8e-3At3g22800leucine-rich repeat family protein / extensin family proteinC.G.S.X.
0.032e-138Triticum aestivumTa.2927.1.S1_s_atBJ207394GA-induced protein-2e-2At3g10185-C.G.S.X.
0.022e-136Vitis vinifera1620940_atCF201899.1--2e+1At5g66990RWP-RK domain-containing proteinC.G.S.X.
0.028e-238Zea maysZm.17796.1.S1_atCK371328--5e-1At3g23130SUP (SUPERMAN)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage