CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g22640

Gene name PAP85

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM S.X. H.G.
0.89 94.6 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner S.X. H.G.
0.88 94.0 At2g28490 817397 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.88 94.0 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.86 93.1 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. S.X. H.G.
0.80 89.8 At3g01570 821106 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
0.78 88.6 At3g27660 822388 OLEO4 (OLEOSIN 4) Encodes oleosin4 (Plant Cell, 2006, 18:1961), a protein found in oil bodies, involved in seed lipid accumulation. Functions in freezing tolerance of seeds. Note: also referred to as OLE3 in Plant Journal 2008, 55:798. S.X. H.G.
0.78 88.6 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO S.X. H.G.
0.74 86.1 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. S.X. H.G.
0.71 84.2 At5g50600 835129 AtHSD1 (hydroxysteroid dehydrogenase 1) F:oxidoreductase activity, binding, catalytic activity;P:response to brassinosteroid stimulus, response to abscisic acid stimulus;C:endomembrane system;BOMFPAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
211.2 100.0 GSM10456 WT Post-Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
205.3 100.0 GSM10454 WT Post-Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
200.0 100.0 GSM131704 ATGE_83_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
189.2 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
183.5 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
172.9 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
168.1 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
167.6 100.0 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
166.9 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
165.1 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-2 40 At5g66000 836730 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBM C.G. S.X.
0.02 5e-2 40 At2g42540 818854 COR15A (COLD-REGULATED 15A) A cold-regulated gene whose product is targeted to the chloroplast and constitutive expression increases freezing tolerance in protoplasts in vitro and chloroplasts in vivo. NMR and x-ray diffraction studies suggest that COR15a alters the intrinsic curvature of the inner membrane of chloroplast envelope. C.G. S.X.
0.02 5e-2 40 At1g61667 842463 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.03 5e-2 40 At1g01810 839247 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP C.G. S.X.
0.01 2e-1 38 At5g22640 832327 emb1211 (embryo defective 1211) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA C.G. S.X.
0.01 2e-1 38 At3g26490 822256 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PB C.G. S.X.
0.01 2e-1 38 At3g01900 821263 CYP94B2 member of CYP94B C.G. S.X.
0.01 2e-1 38 At1g70200 843356 RNA recognition motif (RRM)-containing protein F:nucleic acid binding;P:unknown;C:chloroplast;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-3 46 Glycine max Gma.17956.1.S1_at CD413054 - - 2e-4 At1g06475 unknown protein C.G. S.X.
0.04 2e-2 40 Hordeum vulgare Contig10915_s_at Contig10915 - - 4e-1 At5g53140 protein phosphatase 2C, putative / PP2C, putative C.G. S.X.
0.02 2e-2 42 Oryza sativa Os03g0655400 D26538.1 - CAS15 (Cold acclimation responsive proteinBudCAR4) (Cold acclimation responsive protein BudCAR6) 5e-3 At1g54410 dehydrin family protein C.G. S.X.
0.02 4e-3 44 Populus trichocarpa Ptp.4560.1.S1_s_at CV249566 hypothetical protein - 1e-22 At5g50810 TIM8 C.G. S.X.
0.03 2e-1 38 Triticum aestivum TaAffx.58856.1.S1_at CA614160 - - 2e-2 At3g10060 immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1619063_at CA818733 hypothetical protein LOC100249276 - 2e-43 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.685.1.S1_at AY029317.1 barley mlo defense gene homolog6 - 4e-3 At1g42560 MLO9 (MILDEW RESISTANCE LOCUS O 9) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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