Gene omics information

Query gene ID At3g22420
Gene name WNK2 (WITH NO K 2)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9597.0At3g22420821810WNK2 (WITH NO K 2)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.S.X.H.G.
0.5469.5At2g33250817887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.5368.6At5g58870836004ftsh9 (FtsH protease 9)encodes an FtsH protease that is localized to the chloroplastS.X.H.G.
0.4963.5At1g19715838560jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOBS.X.H.G.
0.4862.5At1g53090841743SPA4 (SPA1-RELATED 4)Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.S.X.H.G.
0.4862.5At3g01180820294AtSS2 (starch synthase 2)F:transferase activity, transferring glycosyl groups;P:cellulose biosynthetic process, glucan biosynthetic process, biosynthetic process, glycogen biosynthetic process;C:chloroplast;OPBMFAVS.X.H.G.
0.4761.2At1g42550840860PMI1 (PLASTID MOVEMENT IMPAIRED1)Encodes a plant-specific protein of unknown function that appears to be conserved among angiosperms.S.X.H.G.
0.4659.8At3g17040820961HCF107 (HIGH CHLOROPHYLL FLUORESCENT 107)It is a RNA tetratricopeptide repeat-containing protein required for normal processing of transcripts from the polycistronic chloroplast psbB-psbT-psbH-petB-petD operon coding for proteins of the photosystem II and cytochrome b6/f complexes. Localizes to the chloroplast membrane. Involved in regulating plastidial gene expression and biogenesis.S.X.H.G.
0.4558.3At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyS.X.H.G.
0.4457.2At3g53920824559SIGC (RNA POLYMERASE SIGMA-SUBUNIT C)Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.S.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.199.8E-MEXP-285-raw-cel-440783335
53.499.8E-MEXP-285-raw-cel-440783273
34.299.7GSM131303AtGen_6-2611_Osmoticstress-Shoots-24.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
32.499.7E-ATMX-33-raw-cel-1562596264
32.299.7GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
31.799.7GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
28.599.7GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.899.7E-MEXP-1474-raw-cel-1593932833
27.799.7GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
26.599.7GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.268e-38159At3g04910819651WNK1 (WITH NO LYSINE (K) 1)Serine/threonine protein kinase, whose transcription is regulated by circadian rhythm.C.G.S.X.
0.121e-1585At3g48260823984WNK3Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.C.G.S.X.
0.074e-1273At3g18750821406WNK6 (WITH NO K (=LYSINE) 6)Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases. Its transcription is under the control of circadian rhythms.C.G.S.X.
0.222e-1171At5g28080832881WNK9Encodes a member of the WNK family (9 members in all) of protein kinases, the structural design of which is clearly distinct from those of other known protein kinases, such as receptor-like kinases and mitogen-activated protein kinases.C.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.264e-25117Glycine maxGmaAffx.75292.1.S1_atBM521603with no lysine kinase 9-5e-31At5g28080WNK9C.G.S.X.
0.121e-757Hordeum vulgareContig7136_atContig7136--3e-7At3g22420WNK2 (WITH NO K 2)C.G.S.X.
0.085e-757Oryza sativaOs05g0108300AY336987.1-MAP kinase-like protein1e-9At3g48260WNK3C.G.S.X.
0.331e-46188Populus trichocarpaPtpAffx.222714.1.S1_atpmrna40302hypothetical protein-5e-113At5g28080WNK9C.G.S.X.
0.032e-448Triticum aestivumTaAffx.73914.1.S1_atCA656400--2e-6At3g04910WNK1 (WITH NO LYSINE (K) 1)C.G.S.X.
0.064e-342Vitis vinifera1615909_s_atCF518671hypothetical protein LOC100255269-2e-17At5g58350WNK4 (WITH NO K (=LYSINE) 4)C.G.S.X.
0.062e-550Zea maysZm.1174.1.A1_atCA401542WNK6-1e-3At1g64630WNK10 (WITH NO LYSINE KINASE 10)C.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0048573A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species.
SGO:0006468The process of introducing a phosphate group on to a protein.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage