CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g22400

Gene name LOX5

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.12 4.9 At3g22400 821808 LOX5 F:electron carrier activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, iron ion binding, metal ion binding;P:root development;C:chloroplast;PMBFO S.X. H.G.
0.33 38.1 At2g23190 816851 CYP81D7 member of CYP81D S.X. H.G.
0.15 7.8 At3g02940 821178 MYB107 (myb domain protein 107) Encodes a putative transcription factor (MYB107). S.X. H.G.
0.14 6.8 At5g49190 834978 SUS2 (SUCROSE SYNTHASE 2) Encodes a putative sucrose synthase (SUS2). The activity of the enzyme could not be assayed as proved to be insoluble (PMID 17257168). Induced specifically by O(2) deficiency. S.X. H.G.
0.11 4.1 At3g53510 824519 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
578.0 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
277.6 100.0 GSM10453 WT Mature Green Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
273.8 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
227.5 100.0 GSM10482 lec1-1 Mature Green Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
157.6 99.9 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
156.0 99.9 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
150.4 99.9 GSM184904 Arabidopsis, root cells, protophloem, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
112.0 99.9 GSM131698 ATGE_81_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
105.1 99.9 GSM10451 WT Mature Green Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
101.6 99.9 GSM131699 ATGE_81_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-3 44 At1g10155 837553 ATPP2-A10 (PHLOEM PROTEIN 2-A10) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.09 2e-2 42 At1g55020 841944 LOX1 lipoxygenase, a defense gene conferring resistance Xanthomonas campestris C.G. S.X.
0.01 9e-2 40 At4g19100 2745715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, membrane;MOBFPV C.G. S.X.
0.01 9e-2 40 At3g25640 822151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 9e-2 40 At3g59770 825146 SAC9 Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses. C.G. S.X.
0.01 3e-1 38 At4g33467 5008180 unknown protein F:unknown;P:unknown;C:unknown;P C.G. S.X.
0.01 3e-1 38 At2g30750 817626 CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12) putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 5e-4 48 Glycine max Gma.1862.1.S1_at J03211.1 lipoxygenase-2 - 1e-4 At1g55020 LOX1 C.G. S.X.
0.03 6e-1 36 Hordeum vulgare Contig1735_s_at Contig1735 - - 1e+0 At3g22400 LOX5 C.G. S.X.
0.06 4e-5 52 Oryza sativa Os03g0700700 AK072689.1 - Lipoxygenase (EC 1.13.11.12) 3e-5 At3g22400 LOX5 C.G. S.X.
0.17 2e-9 65 Populus trichocarpa PtpAffx.208790.1.S1_at pmrna17423 hypothetical protein - 2e-9 At3g22400 LOX5 C.G. S.X.
0.01 4e-1 38 Triticum aestivum TaAffx.107742.1.S1_at CA696088 - - 2e-2 At1g10420 - C.G. S.X.
0.01 2e-3 44 Vitis vinifera 1619508_at CD718567 - - 1e-9 At1g55020 LOX1 C.G. S.X.
0.04 2e-7 57 Zea mays Zm.5319.1.S1_a_at AY103567.1 lipoxygenase - 4e-7 At3g22400 LOX5 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010386 The process whose specific outcome is the progression of the lateral root primordium over time, which initiates the formation to the mature structure. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper.
X GO:0048364 The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00056 Jasmonic acid biosynthesis
00433 Linolenic acid metabolism (cytosolic pathway)

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00592 alpha-Linolenic acid metabolism
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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