CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g22160

Gene name VQ motif-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.61 76.7 At3g22160 821780 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMFBV S.X. H.G.
0.61 76.7 At3g09830 820141 protein kinase, putative F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.61 76.7 At1g01560 839523 ATMPK11 member of MAP Kinase S.X. H.G.
0.60 75.7 At2g05940 815147 protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.59 74.7 At4g34390 829589 XLG2 (extra-large GTP-binding protein 2) F:guanyl nucleotide binding, signal transducer activity;P:in 7 processes;C:nucleus;MFPOB S.X. H.G.
0.56 73.0 At5g35735 833550 auxin-responsive family protein F:unknown;P:unknown;C:plasma membrane, membrane;PMFOB S.X. H.G.
0.55 70.6 At4g34150 829563 C2 domain-containing protein F:unknown;P:response to cold;C:unknown;MPFOBVA S.X. H.G.
0.55 70.6 At2g15390 816031 FUT4 Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundant with FUT1. S.X. H.G.
0.55 70.6 At1g07000 837210 ATEXO70B2 (exocyst subunit EXO70 family protein B2) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. S.X. H.G.
0.54 69.5 At3g11840 820357 PUB24 (PLANT U-BOX 24) Encodes a U-box-domain-containing E3 ubiquitin ligase that acts as a negative regulator of PAMP-triggered immunity. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
88.4 99.9 E-MEXP-807-raw-cel-1173273170
74.0 99.9 GSM128661 Underwood_1-14_Cor-5x10e7-10h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
60.4 99.8 E-MEXP-807-raw-cel-1173273144
53.3 99.8 GSM128675 Underwood_1-28_DC3000-10e8-7h_Rep1_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
51.0 99.8 GSM142846 MG001_ATH1_A27-Torres-9N1 GSE6176 Impact of Type III effectors on plant defense responses
49.8 99.8 GSM13780 Cycloheximide GSE911 Identification of LEAFY targets during reproductive transition
47.8 99.8 GSM13784 Cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
46.0 99.8 GSM13783 Dexamethasone plus cycloheximide - replicate GSE911 Identification of LEAFY targets during reproductive transition
42.4 99.8 E-MEXP-807-raw-cel-1173273116
42.3 99.8 E-MEXP-807-raw-cel-1173273060
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 1e-15 83 At4g15120 827178 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA C.G. S.X.
0.04 5e-3 42 At5g65170 836641 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFB C.G. S.X.
0.05 2e-2 40 At1g35830 840485 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFVB C.G. S.X.
0.03 7e-2 38 At3g47720 823926 SRO4 (SIMILAR TO RCD ONE 4) Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. C.G. S.X.
0.03 3e-1 36 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF C.G. S.X.
0.01 3e-1 36 At4g29010 829022 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities C.G. S.X.
0.01 3e-1 36 At3g25840 822178 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:nucleus;MOFPBVA C.G. S.X.
0.01 1e+0 34 At5g23575 832423 transmembrane protein, putative F:unknown;P:biological_process unknown;C:endoplasmic reticulum, membrane;MOFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 2e+0 34 Glycine max GmaAffx.64584.2.S1_at AW099253 - - 6e-4 At1g13260 RAV1 C.G. S.X.
0.04 6e-7 54 Hordeum vulgare Contig13615_at Contig13615 - - 1e-5 At4g15120 VQ motif-containing protein C.G. S.X.
0.05 1e-8 61 Oryza sativa Os02g0173200 9630.m00720 - VQ domain containing protein 1e-5 At4g15120 VQ motif-containing protein C.G. S.X.
0.04 4e-1 36 Populus trichocarpa PtpAffx.161.1.A1_at DN491136 hypothetical protein - 2e-14 At5g65110 ACX2 (ACYL-COA OXIDASE 2) C.G. S.X.
0.03 5e+0 32 Triticum aestivum TaAffx.105375.1.S1_at CA735373 - - 4e+0 At1g23149 CPuORF29 (Conserved peptide upstream open reading frame 29) C.G. S.X.
0.03 1e+0 32 Vitis vinifera 1621937_at CK138151.1 hypothetical protein LOC100245655 - 2e-1 At4g02810 unknown protein C.G. S.X.
0.05 2e-9 61 Zea mays Zm.16973.1.S1_at CD219246 VQ motif family protein - 1e-8 At3g22160 VQ motif-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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