CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21840

Gene name ASK7 (ARABIDOPSIS SKP1-LIKE 7)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g21840 821738 ASK7 (ARABIDOPSIS SKP1-LIKE 7) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPFOV S.X. H.G.
1.00 100.0 At1g61090 842401 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At3g10590 820227 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POM S.X. H.G.
1.00 100.0 At4g22400 828335 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
1.00 100.0 At4g29570 829078 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO S.X. H.G.
0.98 97.8 At3g11870 820360 protein kinase-related F:endoribonuclease activity, producing 5'-phosphomonoesters, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, mRNA processing;C:endomembrane system;MOPFBVA S.X. H.G.
0.98 97.8 At3g21860 821740 ASK10 (ARABIDOPSIS SKP1-LIKE 10) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV S.X. H.G.
0.98 97.8 At4g29640 829085 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO S.X. H.G.
0.95 97.0 At1g73000 843631 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.93 96.4 At1g31290 840017 PAZ domain-containing protein / piwi domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1304.9 100.0 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
1058.5 100.0 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
534.5 100.0 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
443.1 100.0 GSM311291 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
337.0 100.0 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
280.7 100.0 GSM311292 Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
279.0 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
212.7 100.0 GSM311293 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
208.8 100.0 GSM311294 Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
128.8 99.9 GSM311280 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.82 9e-130 462 At3g21830 821737 ASK8 (ARABIDOPSIS SKP1-LIKE 8) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV C.G. S.X.
0.76 3e-102 371 At3g21860 821740 ASK10 (ARABIDOPSIS SKP1-LIKE 10) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFV C.G. S.X.
0.77 2e-84 311 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues C.G. S.X.
0.28 9e-16 83 At4g34470 829598 ASK12 (ARABIDOPSIS SKP1-LIKE 12) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MPOFV C.G. S.X.
0.28 9e-16 83 At4g34210 829569 ASK11 (ARABIDOPSIS SKP1-LIKE 11) one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development. C.G. S.X.
0.07 3e-6 52 At3g60020 825172 ASK5 (ARABIDOPSIS SKP1-LIKE 5) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:nucleus;MPOFV C.G. S.X.
0.02 5e-2 38 At2g46530 819264 ARF11 (AUXIN RESPONSE FACTOR 11) F:transcription factor activity;P:response to hormone stimulus, regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;POMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 2e-2 40 Glycine max Gma.3293.1.S1_at CD390735 - - 5e-23 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.03 1e-3 42 Hordeum vulgare Contig1591_s_at Contig1591 - - 2e-12 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.05 4e-1 36 Oryza sativa Os09g0274800 9637.m00785 - SKP1-like protein 6e-2 At2g25700 ASK3 (ARABIDOPSIS SKP1-LIKE 3) C.G. S.X.
0.09 7e-5 48 Populus trichocarpa Ptp.5617.2.S1_a_at CV281313 - - 3e-19 At5g42190 ASK2 (ARABIDOPSIS SKP1-LIKE 2) C.G. S.X.
0.05 2e-4 46 Triticum aestivum Ta.25958.1.A1_at CD454802 - - 3e-4 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
0.04 9e-4 42 Vitis vinifera 1607758_at BQ796718 hypothetical protein LOC100267502 - 3e-20 At1g75950 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.821.1.A1_at AI770497 - - 3e+0 At3g21840 ASK7 (ARABIDOPSIS SKP1-LIKE 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006511 The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin moiety, or multiple ubiquitin moieties, to the protein.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04120 Ubiquitin mediated proteolysis
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