CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21720

Gene name ICL (ISOCITRATE LYASE)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.17 10.2 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). S.X. H.G.
0.86 93.1 At1g65340 842842 CYP96A3 member of CYP96A S.X. H.G.
0.67 81.6 At3g48700 824031 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV S.X. H.G.
0.43 55.3 At5g13870 831233 EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4) EXGT-A4, endoxyloglucan transferase, S.X. H.G.
0.25 22.6 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
107.0 99.9 GSM139880 eif3h_non-polysome_rep1 GSE6024 eif3h/WT polysome loading
91.8 99.9 E-MEXP-1607-raw-cel-1620685770
86.4 99.9 E-MEXP-1607-raw-cel-1620685786
78.7 99.9 E-MEXP-1607-raw-cel-1620685802
73.5 99.9 E-MEXP-1607-raw-cel-1620685794
68.6 99.9 E-MEXP-1607-raw-cel-1620685810
63.1 99.8 E-MEXP-1607-raw-cel-1620685834
60.4 99.8 GSM109112 vte1-1(Col-0) 1 day, biological rep3 GSE4847 Expression data from tocopherol deficient seedlings of Arabidopsis
57.1 99.8 GSM305281 control, biological replicate 1 GSE12137 LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
53.6 99.8 GSM153924 ABA control rep1 GSE6638 Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-2 40 At4g36700 829823 cupin family protein F:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVA C.G. S.X.
0.01 2e-1 38 At5g47400 834787 unknown protein F:molecular_function unknown;P:unknown;C:endomembrane system;MPO C.G. S.X.
0.01 3e+0 34 At5g13760 831221 unknown protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBA C.G. S.X.
0.01 3e+0 34 At4g29180 829039 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e+0 34 At4g14760 827131 - F:unknown;P:unknown;C:nucleus;MOBFPAV C.G. S.X.
0.01 3e+0 34 At3g18550 821386 BRC1 (BRANCHED 1) Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth. C.G. S.X.
0.01 3e+0 34 At3g33530 823149 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPF C.G. S.X.
0.01 3e+0 34 At3g15670 820810 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.28 2e-27 125 Glycine max Gma.52.1.S1_at AW200671 - - 1e-27 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
0.35 7e-43 174 Hordeum vulgare Contig8703_at Contig8703 - - 2e-42 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
0.32 3e-39 165 Oryza sativa Os07g0529000 AK103744.1 - Isocitrate lyase (EC 4.1.3.1) (Isocitrase)(Isocitratase) (ICL) 2e-39 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
0.24 6e-21 103 Populus trichocarpa PtpAffx.2015.1.S1_at CK095747 - - 2e-21 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
0.28 9e-35 149 Triticum aestivum TaAffx.99992.1.S1_at CA593620 - - 5e-35 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1613648_at CF212152 hypothetical protein LOC100263963 - 3e-11 At1g20050 HYD1 (HYDRA1) C.G. S.X.
0.16 7e-9 61 Zea mays Zm.13863.1.S1_at U69129.1 isocitrate lyase - 4e-9 At3g21720 ICL (ISOCITRATE LYASE) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
L GO:0019752 The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00152 Glyoxylate cycle

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00630 Glyoxylate and dicarboxylate metabolism
01100 Metabolic pathways
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