Gene omics information

Query gene ID At3g21720
Gene name ICL (ISOCITRATE LYASE)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.1710.2At3g21720821726ICL (ISOCITRATE LYASE)Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).S.X.H.G.
0.8693.1At1g65340842842CYP96A3member of CYP96AS.X.H.G.
0.6781.6At3g48700824031ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAVS.X.H.G.
0.4355.3At5g13870831233EXGT-A4 (ENDOXYLOGLUCAN TRANSFERASE A4)EXGT-A4, endoxyloglucan transferase,S.X.H.G.
0.2522.6At2g40220818614ABI4 (ABA INSENSITIVE 4)encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
107.099.9GSM139880eif3h_non-polysome_rep1GSE6024eif3h/WT polysome loading
91.899.9E-MEXP-1607-raw-cel-1620685770
86.499.9E-MEXP-1607-raw-cel-1620685786
78.799.9E-MEXP-1607-raw-cel-1620685802
73.599.9E-MEXP-1607-raw-cel-1620685794
68.699.9E-MEXP-1607-raw-cel-1620685810
63.199.8E-MEXP-1607-raw-cel-1620685834
60.499.8GSM109112vte1-1(Col-0) 1 day, biological rep3GSE4847Expression data from tocopherol deficient seedlings of Arabidopsis
57.199.8GSM305281control, biological replicate 1GSE12137LEAFY COTYLEDON1 is a key regulator of fatty acid biosynthesis in Arabidopsis thaliana
53.699.8GSM153924ABA control rep1GSE6638Expression data of germinating ahg1, ahg3 and WT seedling in the presence of ABA
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-240At4g36700829823cupin family proteinF:nutrient reservoir activity;P:biological_process unknown;C:endomembrane system;MOFBPVAC.G.S.X.
0.012e-138At5g47400834787unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;MPOC.G.S.X.
0.013e+034At5g13760831221unknown proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFVBAC.G.S.X.
0.013e+034At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAC.G.S.X.
0.013e+034At4g14760827131-F:unknown;P:unknown;C:nucleus;MOBFPAVC.G.S.X.
0.013e+034At3g18550821386BRC1 (BRANCHED 1)Encodes a TCP transcription factor, closely related to teosinte branched1, arrests axillary bud development and prevents axillary bud outgrowth.C.G.S.X.
0.013e+034At3g33530823149transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:chloroplast;MOPFC.G.S.X.
0.013e+034At3g15670820810late embryogenesis abundant protein, putative / LEA protein, putativeF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.282e-27125Glycine maxGma.52.1.S1_atAW200671--1e-27At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
0.357e-43174Hordeum vulgareContig8703_atContig8703--2e-42At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
0.323e-39165Oryza sativaOs07g0529000AK103744.1-Isocitrate lyase (EC 4.1.3.1) (Isocitrase)(Isocitratase) (ICL)2e-39At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
0.246e-21103Populus trichocarpaPtpAffx.2015.1.S1_atCK095747--2e-21At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
0.289e-35149Triticum aestivumTaAffx.99992.1.S1_atCA593620--5e-35At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
0.023e-136Vitis vinifera1613648_atCF212152hypothetical protein LOC100263963-3e-11At1g20050HYD1 (HYDRA1)C.G.S.X.
0.167e-961Zea maysZm.13863.1.S1_atU69129.1isocitrate lyase-4e-9At3g21720ICL (ISOCITRATE LYASE)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0008152The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
LGO:0019752The chemical reactions and pathways involving carboxylic acids, any organic acid containing one or more carboxyl (COOH) groups or anions (COO-).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00152Link to KaPPA-View 4Glyoxylate cycle



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00630Link to KEGG PATHWAYGlyoxylate and dicarboxylate metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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