CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21570

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g21570 821711 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.57 73.8 At3g01630 819891 - F:unknown;P:unknown;C:unknown;PBOFAM S.X. H.G.
0.55 70.6 At1g61290 842423 SYP124 (SYNTAXIN OF PLANTS 124) member of SYP12 Gene Family S.X. H.G.
0.53 68.6 At1g17540 838328 kinase F:kinase activity;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA S.X. H.G.
0.40 50.8 At4g04980 825839 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPBVA S.X. H.G.
0.27 26.2 At2g43230 818924 serine/threonine protein kinase, putative F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.25 22.6 At5g42490 834256 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA S.X. H.G.
0.23 19.3 At5g39400 833936 PTEN1 F:phosphatase activity;P:N-terminal protein myristoylation, pollen development;C:cellular_component unknown;MOFPBA S.X. H.G.
0.16 8.8 At3g17980 821323 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
219.6 100.0 GSM239251 Columbia glabrous (C24) wild type pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
202.7 100.0 GSM239253 CaMV::DME pollen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
187.9 100.0 GSM131636 ATGE_73_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
164.7 100.0 GSM154504 Arabidopsis desiccated mature pollen grains rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
150.1 99.9 E-MEXP-1138-raw-cel-1432772618
143.5 99.9 E-MEXP-1138-raw-cel-1432773226
143.5 99.9 GSM142740 DH001_ATH1_A7-MPG1 GSE6162 Transcriptome analysis of Arabidopsis microgametogenesis
135.6 99.9 GSM131638 ATGE_73_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
134.7 99.9 GSM239252 Columbia glabrous (C24) wild type stamen GSE9408 Identification of putative Arabidopsis DEMETER target genes by GeneChip Analysis
131.8 99.9 E-MEXP-1138-raw-cel-1432772554
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-2 40 At2g46100 819218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO C.G. S.X.
0.03 2e-1 36 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.02 2e-1 36 At4g38390 829996 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 8e-1 34 At3g44310 823556 NIT1 Mutants are resistant to indole-3-acetonitrile (IAN). NIT1 catalyzes the terminal activation step in indole-acetic acid biosynthesis. Predominantly expressed isoform of nitrilase isoenzyme family. Aggregation of NIT1 in cells directly abutting wound sites is one of the earliest events associated with wound and herbicide-induced cell death. The protein undergoes thiolation following treatment with the oxidant tert-butylhydroperoxide. It is also involved in the conversion of IAN to IAM (indole-3-acetamide) and other non-auxin-related metabolic processes. C.G. S.X.
0.02 8e-1 34 At3g10560 820221 UNE9 (UNFERTILIZED EMBRYO SAC 9) member of CYP77A C.G. S.X.
0.05 8e-1 34 At1g11112 6240255 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 4e+0 32 Glycine max HgAffx.17074.1.S1_at CB279282 - - 4e+0 At3g21570 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare HB22H13r_s_at HB22H13r - - 2e-1 At4g00810 60S acidic ribosomal protein P1 (RPP1B) C.G. S.X.
0.04 6e+0 32 Oryza sativa Os04g0678100 9632.m05681 - Protein of unknown function DUF1218 family protein 2e-1 At1g52910 unknown protein C.G. S.X.
0.07 3e-4 46 Populus trichocarpa PtpAffx.1408.1.A1_s_at BP935758 hypothetical protein - 6e-4 At3g21570 unknown protein C.G. S.X.
0.05 1e-2 40 Triticum aestivum TaAffx.82447.1.S1_at CA672191 - - 1e-2 At3g21570 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1616744_at CD004223 hypothetical protein LOC100247994 - 1e+0 At3g21570 unknown protein C.G. S.X.
0.03 1e+0 32 Zea mays Zm.16409.1.A1_at CF623827 - - 2e-2 At4g22540 ORP2A (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2A) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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