CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21540

Gene name transducin family protein / WD-40 repeat family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.75 86.9 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA S.X. H.G.
0.73 85.5 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV S.X. H.G.
0.73 85.5 At4g05410 825889 transducin family protein / WD-40 repeat family protein F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA S.X. H.G.
0.71 84.2 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.69 82.9 At3g09720 820129 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.68 82.2 At4g04940 825833 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:CUL4 RING ubiquitin ligase complex;MFBOPA S.X. H.G.
0.53 68.6 At3g12270 820407 PRMT3 (PROTEIN ARGININE METHYLTRANSFERASE 3) F:methyltransferase activity, zinc ion binding;P:metabolic process;C:intracellular;MBOFPA S.X. H.G.
0.52 67.4 At5g14050 831254 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAV S.X. H.G.
0.51 66.3 At3g57660 824935 NRPA1 Encodes a subunit of RNA polymerase I (aka RNA polymerase A). S.X. H.G.
0.51 66.3 At4g32720 829408 AtLa1 (Arabidopsis thaliana La protein 1) Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.8 99.8 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
53.3 99.8 E-MEXP-849-raw-cel-1181981030
46.2 99.8 E-MEXP-849-raw-cel-1181981046
38.3 99.8 E-MEXP-849-raw-cel-1181981006
32.3 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.4 99.7 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.2 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
29.4 99.7 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
28.5 99.7 E-MEXP-849-raw-cel-1181981022
27.1 99.7 GSM133119 RIKEN-YAMAUCHI2A GSE5687 AtGenExpress: Different temperature treatment of seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-2 42 At1g78610 844197 MSL6 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 6) F:unknown;P:unknown;C:plasma membrane, membrane;BOFAP C.G. S.X.
0.01 4e-1 38 At3g42180 823191 catalytic/ transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups, catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.01 4e-1 38 At3g28770 822509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBFPVA C.G. S.X.
0.01 1e+0 36 At4g29380 829059 protein kinase family protein / WD-40 repeat family protein F:protein serine/threonine kinase activity, binding, protein kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:CUL4 RING ubiquitin ligase complex;MOFPBVA C.G. S.X.
0.01 1e+0 36 At4g30820 829205 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related F:molecular_function unknown;P:cell cycle;C:nucleus;MFPO C.G. S.X.
0.01 1e+0 36 At3g07525 819941 ATG10 (autophagy 10) Encodes an E1 ligase involved in autophagic vesicle formation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 3e-45 184 Glycine max GmaAffx.71612.1.S1_at BI317633 - - 2e-45 At3g21540 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 7e-1 36 Hordeum vulgare Contig4590_at Contig4590 - - 6e+0 At2g18740 small nuclear ribonucleoprotein E, putative / snRNP-E, putative / Sm protein E, putative C.G. S.X.
0.12 2e-44 182 Oryza sativa Os03g0151700 AK101270.1 - WD repeat protein (Fragment) 1e-44 At3g21540 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.35 3e-58 228 Populus trichocarpa PtpAffx.219787.1.S1_s_at pmrna35877 hypothetical protein - 2e-58 At3g21540 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.01 6e+0 34 Triticum aestivum TaAffx.107708.1.S1_at CA682186 - - 1e+0 At1g77980 AGL66 (AGAMOUS-LIKE 66) C.G. S.X.
0.01 2e+0 34 Vitis vinifera 1617427_at CD800714 - - 1e+0 At3g58150 - C.G. S.X.
0.01 2e+0 34 Zea mays ZmAffx.104.1.A1_at AI665536 hypothetical protein LOC100273079 - 8e-1 At2g34980 SETH1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006364 Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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