CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21510

Gene name AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At3g21510 821705 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) Encodes AHP1, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). S.X. H.G.
0.61 76.7 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.60 75.7 At2g44010 819006 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.60 75.7 At1g29280 839802 WRKY65 member of WRKY Transcription Factor; Group II-e S.X. H.G.
0.58 73.8 At1g49310 841354 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.57 73.8 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.56 73.0 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.55 70.6 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.55 70.6 At5g25160 832587 ZFP3 (ZINC FINGER PROTEIN 3) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.9 99.8 GSM184552 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
54.3 99.8 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
49.9 99.8 GSM184555 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
47.5 99.8 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
46.8 99.8 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
46.3 99.8 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
45.1 99.8 GSM75519 slr-1 0h NAA replicate 2 GSE3350 SLR/IAA14-dependent auxin induced lateral root initiation
41.2 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
38.8 99.8 GSM27361 WT Root GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
36.3 99.7 E-MEXP-1112-raw-cel-1590666001
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.11 2e-4 46 At5g39340 833930 AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). C.G. S.X.
0.06 2e-4 46 At1g03430 839506 AHP5 (HISTIDINE-CONTAINING PHOSPHOTRANSFER FACTOR 5) Encodes AHP5, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). C.G. S.X.
0.04 2e-1 36 At5g09920 830853 NRPB4 Non-catalytic subunit specific to DNA-dependent RNA polymerase II; the ortholog of budding yeast RPB4) C.G. S.X.
0.01 2e-1 36 At3g15990 820844 SULTR3 Encodes sulfate transporter Sultr3;4. C.G. S.X.
0.02 9e-1 34 At5g07270 830618 ankyrin repeat family protein F:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVA C.G. S.X.
0.01 9e-1 34 At4g18240 827550 ATSS4 F:transferase activity, transferring glycosyl groups;P:starch metabolic process;C:chloroplast;MOBPFAV C.G. S.X.
0.01 9e-1 34 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA C.G. S.X.
0.02 9e-1 34 At1g17790 838357 DNA-binding bromodomain-containing protein F:DNA binding;P:biological_process unknown;C:chloroplast;MOFBPVA C.G. S.X.
0.01 9e-1 34 At1g72300 843562 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.20 2e-2 40 Glycine max GmaAffx.93131.1.S1_s_at CF807895 - - 3e-2 At3g21510 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig8334_s_at Contig8334 - - 1e+0 At1g29810 dehydratase family C.G. S.X.
0.03 2e+0 34 Oryza sativa OsAffx.31269.1.S1_at - - - 0 C.G. S.X.
0.25 2e-11 69 Populus trichocarpa PtpAffx.54186.2.S1_s_at CV131651 histidine phosphotransfer protein - 2e-11 At3g21510 AHP1 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 1) C.G. S.X.
0.05 4e+0 32 Triticum aestivum TaAffx.22877.1.S1_at CA743893 - - 2e+0 At4g30740 unknown protein C.G. S.X.
0.12 1e+0 32 Vitis vinifera 1622244_at CF404824 - - 1e+0 At3g03828 unknown protein C.G. S.X.
0.03 2e+0 32 Zea mays Zm.12691.1.A1_at BU645208 zinc finger C-x8-C-x5-C-x3-H type family protein - 2e+0 At4g16990 RLM3 (RESISTANCE TO LEPTOSPHAERIA MACULANS 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009736 A series of molecular signals induced by the detection of cytokinin.
X GO:0000160 A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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