CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21500

Gene name 1-deoxy-D-xylulose-5-phosphate synthase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At3g21500 821704 1-deoxy-D-xylulose-5-phosphate synthase Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. S.X. H.G.
0.47 61.2 At1g49800 841403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.46 59.8 At1g11590 837702 pectin methylesterase, putative F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOM S.X. H.G.
0.36 43.6 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO S.X. H.G.
0.33 38.1 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
871.8 100.0 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
695.9 100.0 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
208.4 100.0 E-MEXP-711-raw-cel-1563002902
200.3 100.0 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
167.9 100.0 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
151.0 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
139.5 99.9 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
119.8 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
97.4 99.9 GSM311286 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
92.2 99.9 GSM133025 BC181-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.70 1e-178 626 At4g15560 827230 CLA1 (CLOROPLASTOS ALTERADOS 1) Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis C.G. S.X.
0.08 4e-9 63 At5g11380 831009 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3) Encodes a protein postulated to have 1-deoxy-D-xylulose 5-phosphate synthase activity. C.G. S.X.
0.02 2e-1 38 At4g15510 827223 photosystem II reaction center PsbP family protein F:calcium ion binding;P:photosynthesis;C:in 9 components;PBO C.G. S.X.
0.01 2e-1 38 At4g12000 826807 - F:unknown;P:response to oxidative stress;C:unknown;BOPMFA C.G. S.X.
0.01 2e-1 38 At4g12740 826886 adenine-DNA glycosylase-related / MYH-related F:hydrolase activity, 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:unknown;MOBFPVA C.G. S.X.
0.01 2e-1 38 At3g20980 821649 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.43 4e-53 210 Glycine max Gma.11205.1.S1_a_at BF066553 - - 1e-61 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.01 2e+0 34 Hordeum vulgare HVSMEg0002A17r2_at HVSMEg0002A17r2 - - 8e-1 At1g48200 unknown protein C.G. S.X.
0.07 5e-4 48 Oryza sativa Os05g0408900 AK106750.1 - 1-D-deoxyxylulose 5-phosphate synthase 4e-9 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.23 5e-28 127 Populus trichocarpa PtpAffx.157570.1.S1_at AJ772824 hypothetical protein - 4e-45 At4g15560 CLA1 (CLOROPLASTOS ALTERADOS 1) C.G. S.X.
0.02 4e+0 34 Triticum aestivum TaAffx.57940.2.S1_at CA623700 - - 1e+1 At5g57655 xylose isomerase family protein C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1614626_at CF208834 - - 1e-22 At5g65760 serine carboxypeptidase S28 family protein C.G. S.X.
0.04 1e-1 38 Zea mays Zm.13827.1.S1_at CF014663 - - 2e-9 At5g11380 DXPS3 (1-deoxy-D-xylulose 5-phosphate synthase 3) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0016114 The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure.
L GO:0008152 The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00032 Non mevalonate terpenoid biosynthesis
00036 Pyridoxal 5'-phosphate biosynthesis and salvage pathway
00038 Thiamine biosynthesis

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00900 Terpenoid backbone biosynthesis
01062 Biosynthesis of terpenoids and steroids
01066 Biosynthesis of alkaloids derived from terpenoid and polyketide
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage