Gene omics information

Query gene ID At3g21480
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2217.5At3g21480821702-F:molecular_function unknown;P:biological_process unknown;C:intracellular;MOPBFAS.X.H.G.
0.3846.7At4g02070828147MSH6 (MUTS HOMOLOG 6)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.S.X.H.G.
0.2624.4At4g35050829657MSI3 (MULTICOPY SUPPRESSOR OF IRA1 3)Encodes a WD-40 repeat protein similar to yeast MSI1. The predicted protein has a DWD motif. It can bind to DDB1a in Y2H assays, and DDB1b in co-IP assays, and may be involved in the formation of a CUL4-based E3 ubiquitin ligaseS.X.H.G.
0.2115.8At1g67630843086POLA2 (DNA POLYMERASE ALPHA 2)F:DNA binding, DNA-directed DNA polymerase activity;P:DNA replication;C:mitochondrion;MFOPS.X.H.G.
0.1912.7At1g32730840167unknown proteinF:unknown;P:unknown;C:chloroplast;MPOBFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
176.6100.0GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
106.499.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
90.399.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
60.699.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.099.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
48.599.8E-ATMX-35-raw-cel-1574334832
38.499.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.499.7GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
29.499.7GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.899.7GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.014e-138At4g18060827531clathrin bindingF:clathrin binding;P:unknown;C:unknown;MOFPBC.G.S.X.
0.014e-138At2g37280818305PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVC.G.S.X.
0.014e-138At1g55670842016PSAG (PHOTOSYSTEM I SUBUNIT G)Encodes subunit G of photosystem I, an 11-kDa membrane protein that plays an important role in electron transport between plastocyanin and PSI and is involved in the stability of the PSI complex. PSI-G subunit is bound to PSI-B and is in contact with Lhca1. The protein inserts into thylakoids by a direct or "spontaneous" pathway that does not involve the activities of any known chloroplast protein-targeting machinery. PSI-G appears to be directly or indirectly involved in the interaction between Photosystem I and plastocyanin.C.G.S.X.
0.012e+036At5g01650831707macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPFC.G.S.X.
0.012e+036At4g02070828147MSH6 (MUTS HOMOLOG 6)encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.C.G.S.X.
0.012e+036At4g24170828517kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFBPVAC.G.S.X.
0.012e+036At3g15340820765PPI2 (proton pump interactor 2)Hypothetical protein similar to PPI1, a protein that interacts with the plasma membrane H+ ATPase AHA1C.G.S.X.
0.012e+036At3g43910823507unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPBC.G.S.X.
0.012e+036At3g43900823506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e+036Glycine maxPsAffx.C7000191_atPsAffx.C7000191--4e-2At2g47110UBQ6C.G.S.X.
0.013e+034Hordeum vulgareContig4380_s_atContig4380--2e-2At2g3345050S ribosomal protein L28, chloroplast (CL28)C.G.S.X.
0.025e-861Oryza sativaOs01g0939300AK101079.1-BRCT domain containing protein2e-8At3g21480-C.G.S.X.
0.016e-138Populus trichocarpaPtpAffx.4559.2.A1_x_atCV273877hypothetical protein-1e-7At5g15780pollen Ole e 1 allergen and extensin family proteinC.G.S.X.
0.016e+034Triticum aestivumTaAffx.111915.1.S1_atCA630585--7e-2At4g02235AGL51C.G.S.X.
0.022e+034Vitis vinifera1621336_atCD798795hypothetical protein LOC100254009-1e-84At4g08390SAPX (STROMAL ASCORBATE PEROXIDASE)C.G.S.X.
0.013e+034Zea maysZm.2704.1.S1_a_atAW066934--2e-44At3g44850protein kinase-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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