CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21300

Gene name RNA methyltransferase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV S.X. H.G.
0.70 83.5 At3g54090 824576 pfkB-type carbohydrate kinase family protein F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleus, chloroplast, nucleoid, cytoplasm;BOPAMF S.X. H.G.
0.66 80.1 At5g23310 832395 FSD3 (FE SUPEROXIDE DISMUTASE 3) Fe superoxide dismutase S.X. H.G.
0.65 79.6 At1g69200 843251 kinase F:kinase activity;P:acetate fermentation, sucrose biosynthetic process, sucrose catabolic process, using beta-fructofuranosidase;C:nucleoid;BOPAMF S.X. H.G.
0.57 73.8 At2g34640 818029 PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression. S.X. H.G.
0.55 70.6 At3g48500 824009 RNA binding F:RNA binding;P:unknown;C:plastid chromosome, chloroplast, nucleoid;POVMFB S.X. H.G.
0.51 66.3 At2g04530 814995 CPZ Encodes a protein with RNAse Z activity suggesting a role in tRNA processing. Protein contains a signal sequence for import into the chloroplast. S.X. H.G.
0.48 62.5 At1g48570 841278 zinc finger (Ran-binding) family protein F:binding, zinc ion binding;P:unknown;C:intracellular, chloroplast;MPOF S.X. H.G.
0.43 55.3 At1g79560 844294 FTSH12 (FTSH PROTEASE 12) encodes an FtsH protease that is localized to the chloroplast S.X. H.G.
0.42 53.9 At5g51100 835183 FSD2 (FE SUPEROXIDE DISMUTASE 2) Fe superoxide dismutase whose mRNA levels are increased in response to exposure to UV-B. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.4 99.8 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
50.8 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.1 99.8 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
47.3 99.8 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.9 99.8 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.6 99.8 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
43.1 99.8 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.3 99.8 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
42.2 99.8 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.4 99.8 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 5e-2 40 At4g38090 829965 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOAMFP C.G. S.X.
0.01 8e-1 36 At5g65930 836723 ZWI (ZWICHEL) encodes a novel member of the kinesin superfamily of motor proteins. recessive mutations have reduced number of trichome branches. C.G. S.X.
0.01 8e-1 36 At4g19960 827740 potassium ion transmembrane transporter F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:membrane;BPOFAV C.G. S.X.
0.01 8e-1 36 At3g20500 821596 PAP18 (PURPLE ACID PHOSPHATASE 18) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA C.G. S.X.
0.01 8e-1 36 At1g78240 844160 TSD2 (TUMOROUS SHOOT DEVELOPMENT 2) Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development. C.G. S.X.
0.01 8e-1 36 At1g72300 843562 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of PSY1. PSY1 is an 18-aa tyrosine-sulfated glycopeptide encoded by AT5G58650 that promotes cellular proliferation and expansion. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 4e-28 127 Glycine max GmaAffx.82726.1.S1_at BE803503 - - 1e-28 At3g21300 RNA methyltransferase family protein C.G. S.X.
0.01 4e-1 36 Hordeum vulgare Contig13867_s_at Contig13867 - - 6e-3 At2g02840 - C.G. S.X.
0.10 2e-15 85 Oryza sativa Os01g0193600 AK068784.1 - Deoxyribonuclease/rho motif-related TRAM domaincontaining protein 1e-15 At3g21300 RNA methyltransferase family protein C.G. S.X.
0.49 7e-73 276 Populus trichocarpa PtpAffx.215186.1.S1_at pmrna29233 - - 4e-73 At3g21300 RNA methyltransferase family protein C.G. S.X.
0.09 4e-15 83 Triticum aestivum TaAffx.106446.1.S1_at CA718735 - - 1e-15 At3g21300 RNA methyltransferase family protein C.G. S.X.
0.34 1e-24 113 Vitis vinifera 1610906_at CD009181 - - 2e-24 At3g21300 RNA methyltransferase family protein C.G. S.X.
0.01 6e+0 32 Zea mays ZmAffx.1461.1.S1_at 11990232-28 ATP synthase epsilon chain - 3e-65 Atcg00470 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006396 Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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