CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21140

Gene name FMN binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g21140 821666 FMN binding F:FMN binding;P:unknown;C:chloroplast;BOPM S.X. H.G.
0.52 67.4 At1g56350 842089 peptide chain release factor, putative F:translation release factor activity, codon specific, translation release factor activity;P:translational termination;C:cytoplasm;OBMFPV S.X. H.G.
0.45 58.3 At3g12990 820485 RRP45a (Ribonuclease PH45a) Encodes a 3'-5' exoribonuclease, partially redundant with CER7. Involved in epicuticular wax biosynthesis. S.X. H.G.
0.44 57.2 At4g15570 827233 MAA3 (MAGATAMA 3) Similar to yeast Sen1 (splicing endonuclease 1)helicase protein. Involved in female gametophyte development. S.X. H.G.
0.43 55.3 At2g31240 817681 tetratricopeptide repeat (TPR)-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;MBOFPAV S.X. H.G.
0.42 53.9 At1g73240 843658 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.39 48.4 At3g06940 3768779 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.38 46.7 At5g64730 836594 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOBPAV S.X. H.G.
0.38 46.7 At2g31740 817731 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;OBMPFA S.X. H.G.
0.36 43.6 At1g52380 841668 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein F:molecular_function unknown;P:intracellular transport;C:cytosol, nucleus;MFOPBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
51.9 99.8 GSM205430 met1-3_leaf_fourth-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
45.3 99.8 GSM205364 met1-3_leaf_second-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
41.6 99.8 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
39.2 99.8 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
37.0 99.7 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
32.7 99.7 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
31.0 99.7 GSM205426 met1-3_leaf_second-selfed generation_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
29.3 99.7 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
27.3 99.7 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
26.5 99.7 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.63 0 690 At1g51560 841581 FMN binding F:FMN binding;P:unknown;C:chloroplast;BOPM C.G. S.X.
0.01 1e-1 38 At2g40430 818636 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB C.G. S.X.
0.01 6e-1 36 At4g34520 829603 KCS18 Encodes KCS18, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). C.G. S.X.
0.01 6e-1 36 At3g03380 821268 DegP7 (DegP protease 7) Encodes a putative DegP protease. C.G. S.X.
0.01 6e-1 36 At3g02330 821115 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;POMFBA C.G. S.X.
0.01 2e+0 34 At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 C.G. S.X.
0.01 2e+0 34 At4g33160 829453 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.26 1e-21 105 Glycine max Gma.8088.1.S1_at BM178311 - - 9e-30 At1g51560 FMN binding C.G. S.X.
0.16 8e-14 77 Hordeum vulgare Contig7745_at Contig7745 - - 2e-13 At3g21140 FMN binding C.G. S.X.
0.41 4e-37 157 Oryza sativa Os08g0517500 NM_189026.1 - Pyridoxamine 5'-phosphate oxidase-related domaincontaining protein 7e-34 At1g51560 FMN binding C.G. S.X.
0.43 5e-36 153 Populus trichocarpa PtpAffx.39611.1.A1_at CV254673 hypothetical protein - 3e-36 At3g21140 FMN binding C.G. S.X.
0.27 7e-10 65 Triticum aestivum Ta.2689.1.S1_at CD879309 - - 1e-9 At3g21140 FMN binding C.G. S.X.
0.23 3e-18 91 Vitis vinifera 1619155_at CF213888 - - 7e-18 At3g21140 FMN binding C.G. S.X.
0.14 1e-9 63 Zea mays Zm.14996.1.S1_at CK985437 pyridoxamine 5-phosphate oxidase family protein - 2e-12 At1g51560 FMN binding C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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