CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21070

Gene name NADK1 (NAD KINASE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At3g21070 821659 NADK1 (NAD KINASE 1) Encodes a protein with NAD(H) kinase activity. S.X. H.G.
0.40 50.8 At1g61560 842450 MLO6 (MILDEW RESISTANCE LOCUS O 6) A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO6 belongs to the clade IV, with AtMLO2, AtMLO3 and AtMLO12. The gene is expressed during early seedling growth, in roots and lateral root primordia, in flower and fruit abscission zone, in vascular system of cotyledons, young leaves and petals, in mature rosette leaves, in anthers, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s). S.X. H.G.
0.20 14.4 At2g27660 817312 DC1 domain-containing protein F:zinc ion binding;P:unknown;C:chloroplast;BPMOFVA S.X. H.G.
0.04 0.9 At2g23770 816909 protein kinase family protein / peptidoglycan-binding LysM domain-containing protein F:kinase activity;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOBFVA S.X. H.G.
0.03 0.6 At1g73080 843639 PEPR1 (PEP1 receptor 1) Encodes a leucine-rich repeat receptor kinase. Functions as a receptor for AtPep1 to amplify innate immunity response to pathogen attacks. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
154.4 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
126.6 99.9 GSM311283 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
104.5 99.9 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
102.7 99.9 E-MEXP-1443-raw-cel-1581869863
93.0 99.9 E-NASC-76-raw-cel-1359879132
74.0 99.9 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
72.4 99.9 GSM131134 AtGen_B-20_2-6-1_REP2_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
70.1 99.9 E-NASC-76-raw-cel-1359878951
67.5 99.8 E-MEXP-1443-raw-cel-1581869921
67.1 99.8 GSM131148 AtGen_B-34_3-6-1_REP3_ATH1 GSE5615 AtGenExpress: Response to bacterial-(LPS, HrpZ, Flg22) and oomycete-(NPP1) derived elicitors
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-2 42 At3g21080 821660 ABC transporter-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At4g13210 826936 lyase/ pectate lyase F:lyase activity, pectate lyase activity;P:biological_process unknown;C:unknown;PBFO C.G. S.X.
0.01 8e-1 36 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction C.G. S.X.
0.01 8e-1 36 At1g14290 837990 SBH2 (SPHINGOID BASE HYDROXYLASE 2) Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth. C.G. S.X.
0.01 8e-1 36 At1g79990 844339 protein binding / structural molecule F:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:membrane coat, endomembrane system, COPI vesicle coat;MFOBPAV C.G. S.X.
0.02 3e+0 34 At5g64780 836599 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 3e+0 34 At5g63130 836433 octicosapeptide/Phox/Bem1p (PB1) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.34 1e-31 139 Glycine max GmaAffx.53527.2.S1_at BM527950 - - 2e-32 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.16 2e-15 83 Hordeum vulgare Contig11274_at Contig11274 - - 3e-15 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.20 1e-28 129 Oryza sativa Os01g0957000 AK099730.1 - ATP-NAD/AcoX kinase family protein 1e-28 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.37 9e-57 222 Populus trichocarpa PtpAffx.58806.1.S1_at CK097024 hypothetical protein - 5e-57 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.20 3e-16 87 Triticum aestivum Ta.7659.1.S1_at CD930353 - - 3e-16 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.05 2e-5 50 Vitis vinifera 1617036_at CF210807 hypothetical protein LOC100243315 - 2e-5 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
0.20 4e-19 95 Zea mays Zm.827.1.A1_at BM073451 NAD kinase 1 - 6e-19 At3g21070 NADK1 (NAD KINASE 1) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
S GO:0006741 The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH.
C GO:0019363 The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00760 Nicotinate and nicotinamide metabolism
01100 Metabolic pathways
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage