CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g21000

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.83 91.4 At3g21000 821651 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO S.X. H.G.
0.70 83.5 At1g32850 840179 UBP11 (UBIQUITIN-SPECIFIC PROTEASE 11) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MOFPVB S.X. H.G.
0.70 83.5 At1g07060 837217 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.69 82.9 At5g28340 832919 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.63 78.1 At3g51690 824332 - DNA helicase homolog PIF1. S.X. H.G.
0.60 75.7 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM S.X. H.G.
0.60 75.7 At4g38940 830049 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOA S.X. H.G.
0.58 73.8 At1g52920 841725 GPCR (G PROTEIN COUPLED RECEPTOR) Encodes a plasma membrane�localized ABA receptor, which interacts with the Gαβγ complex. It has been postulated that the binding of ABA to GCR2 results in the release of the G protein and dissociation of the heterotrimeric complex into Gα and the Gβγ dimer to activate downstream ABA effectors and to trigger the ABA responses. S.X. H.G.
0.58 73.8 At1g68120 843140 BPC3 (BASIC PENTACYSTEINE 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P S.X. H.G.
0.57 73.8 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
275.4 100.0 E-ATMX-35-raw-cel-1574334832
248.0 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
238.9 100.0 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
230.0 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
225.4 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
223.0 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.8 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
221.3 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
210.5 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
207.4 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.20 3e-21 103 At3g20980 821649 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO C.G. S.X.
0.02 2e-1 38 At4g21660 828253 proline-rich spliceosome-associated (PSP) family protein F:unknown;P:mRNA processing;C:nucleus, chloroplast;MOFPVBA C.G. S.X.
0.02 6e-1 36 At5g12270 831102 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.02 6e-1 36 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF C.G. S.X.
0.03 6e-1 36 At1g14048 6240654 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 2e+0 34 At5g45510 834587 leucine-rich repeat family protein F:protein binding;P:unknown;C:cytosol;MOPBFVA C.G. S.X.
0.01 2e+0 34 At5g18700 831988 EMB3013 (embryo defective 3013) F:protein serine/threonine kinase activity, binding, protein kinase activity, kinase activity, ATP binding;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 2e+0 34 At5g07660 830659 structural maintenance of chromosomes (SMC) family protein F:protein binding, two-component sensor activity, ATP binding;P:signal transduction, chromosome segregation, chromosome organization;C:chromosome, nucleus, membrane;MOBFPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max PsAffx.psMC006xF22f_at PsAffx.psMC006xF22f - - 2e+0 At4g30820 cyclin-dependent kinase-activating kinase assembly factor-related / CDK-activating kinase assembly factor-related C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig17227_at Contig17227 - - 3e-10 At1g60550 ECHID (ENOYL-COA HYDRATASE/ISOMERASE D) C.G. S.X.
0.02 8e-2 40 Oryza sativa OsAffx.27328.1.S1_at - - - 0 C.G. S.X.
0.03 8e-1 36 Populus trichocarpa PtpAffx.218299.1.S1_at pmrna33863 hypothetical protein - 5e-10 At3g06760 - C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.113279.1.S1_at CA616645 - - 2e-51 At1g15690 AVP1 C.G. S.X.
0.02 1e-2 40 Vitis vinifera 1607934_at CF372470 hypothetical protein LOC100257058 - 2e-21 At5g10750 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.12428.2.A1_at AY107621.1 - - 4e+0 At3g21000 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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