CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g20580

Gene name COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g20580 821605 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
0.95 97.0 At2g26450 817185 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO S.X. H.G.
0.90 95.1 At1g68110 843139 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related F:phospholipid binding, clathrin binding, binding, phosphatidylinositol binding;P:clathrin coat assembly;C:clathrin coat;PMFO S.X. H.G.
0.89 94.6 At1g04540 839498 C2 domain-containing protein F:unknown;P:biological_process unknown;C:membrane;PMOFB S.X. H.G.
0.88 94.0 At3g05610 819727 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;OBPFMVA S.X. H.G.
0.85 92.4 At1g55560 842005 sks14 (SKU5 Similar 14) F:oxidoreductase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOA S.X. H.G.
0.85 92.4 At5g20410 832163 MGD2 Encodes a type B monogalactosyldiacylglycerol (MGDG) synthase. Strongly induced by phosphate deprivation, and in non-photosynthetic tissues. Does not contribute to galactolipid synthesis under Pi-sufficient conditions but does under Pi starvation. S.X. H.G.
0.85 92.4 At5g50830 835155 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMFBPVA S.X. H.G.
0.84 91.9 At2g23900 816922 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOMA S.X. H.G.
0.84 91.9 At2g31500 817708 CPK24 member of Calcium Dependent Protein Kinase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
169.4 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
165.5 100.0 E-MEXP-1138-raw-cel-1432772746
149.7 99.9 E-MEXP-1138-raw-cel-1432772522
144.1 99.9 E-MEXP-1138-raw-cel-1432772810
140.3 99.9 E-MEXP-1138-raw-cel-1432772906
138.1 99.9 E-MEXP-285-raw-cel-440782791
136.4 99.9 E-MEXP-1138-raw-cel-1432772586
123.9 99.9 E-MEXP-1138-raw-cel-1432772778
122.2 99.9 E-MEXP-285-raw-cel-440782725
121.9 99.9 E-MEXP-1138-raw-cel-1432772554
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.25 3e-25 117 At4g27110 828819 COBL11 (COBRA-LIKE PROTEIN 11 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.04 1e-3 46 At3g16860 820941 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
0.04 2e-2 42 At4g16120 827298 COBL7 (COBRA-LIKE 7) putative membrane-anchored cell wall protein C.G. S.X.
0.01 3e-1 38 At4g30080 829131 ARF16 (AUXIN RESPONSE FACTOR 16) Involved in root cap cell differentiation. Gene expression is regulated by mir160.Located in the nucleus. C.G. S.X.
0.02 3e-1 38 At1g10717 5007678 - Encodes a Maternally expressed gene (MEG) family protein C.G. S.X.
0.01 3e-1 38 At1g75240 843861 AtHB33 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 33) F:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;PMOFBV C.G. S.X.
0.01 1e+0 36 At4g11700 826775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 1e+0 36 At4g04690 825802 F-box family protein (FBX15) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO C.G. S.X.
0.01 1e+0 36 At4g37900 829946 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.01 1e+0 36 Glycine max HgAffx.9579.1.S1_at CB378922 - - 5e-2 At5g53590 auxin-responsive family protein C.G. S.X.
0.03 2e-3 44 Hordeum vulgare Contig6773_at Contig6773 - - 5e-3 At3g20580 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) C.G. S.X.
0.02 2e+0 36 Oryza sativa Os02g0273900 AK111035.1 - Conserved hypothetical protein 2e-2 At1g55205 unknown protein C.G. S.X.
0.04 1e+0 36 Populus trichocarpa PtpAffx.211189.1.S1_at pmrna21994 hypothetical protein - 1e+0 At3g20580 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) C.G. S.X.
0.04 1e-3 46 Triticum aestivum TaAffx.65012.1.S1_at BG607332 - - 6e-4 At3g20580 COBL10 (COBRA-LIKE PROTEIN 10 PRECURSOR) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1622504_at CD008939 - - 1e+0 At3g45760 unknown protein C.G. S.X.
0.03 1e-1 38 Zea mays ZmAffx.720.1.S1_at AI739909 - - 2e-1 At1g11572 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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