CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g20500

Gene name PAP18 (PURPLE ACID PHOSPHATASE 18)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g20500 821596 PAP18 (PURPLE ACID PHOSPHATASE 18) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA S.X. H.G.
0.15 7.8 At3g48000 823955 ALDH2B4 (ALDEHYDE DEHYDROGENASE 2B4) Encodes a putative (NAD+) aldehyde dehydrogenase. S.X. H.G.
0.05 1.1 At5g50960 835169 NBP35 (NUCLEOTIDE BINDING PROTEIN 35) Highly similar to Saccharomyces cerevisiae NBP35, locus YGL091C. Cytosolic protein that homodimerizes and can assemble both 4Fe-4S - type and 2Fe-2S - type clusters on its amino terminal and carboxy therminal respectively. Null mutants are embryo lethal. S.X. H.G.
0.03 0.6 At4g02340 828063 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:peroxisome;BOMFPAV S.X. H.G.
0.01 0.2 At5g50870 835159 UBC27 (ubiquitin-conjugating enzyme 27) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV S.X. H.G.
0.01 0.2 At1g16010 838171 magnesium transporter CorA-like family protein (MRS2-1) F:metal ion transmembrane transporter activity;P:metal ion transport;C:vacuole, membrane;PFOMBA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
54.7 99.8 GSM142878 GW001_ATH1_A23-Warre-03f GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
46.8 99.8 GSM142879 GW001_ATH1_A24-Warre-03f GSE6177 The effects of the sfr2, sfr3 and sfr6 mutations on lyotropic stress responses
40.2 99.8 E-MEXP-849-raw-cel-1181980990
37.7 99.7 GSM128713 Thorlby_1-2_3h-post-freeze_REP3_ATH1 GSE5524 Gene Expression During Recovery from Freezing
37.1 99.7 E-MEXP-849-raw-cel-1181980982
32.6 99.7 GSM270865 Arabidopsis cell culture, 4 h_control_rep3 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
29.8 99.7 E-MEXP-849-raw-cel-1181980998
20.0 99.6 GSM270853 Arabidopsis cell culture, 4 h_control_rep2 GSE10719 Response of Arabidopsis cell culture to phytoprostane A1
16.1 99.5 GSM142848 MG001_ATH1_A29-Torres-9N3 GSE6176 Impact of Type III effectors on plant defense responses
15.7 99.5 E-MEXP-849-raw-cel-1181981046
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At5g61600 836281 ethylene-responsive element-binding family protein encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. C.G. S.X.
0.02 2e-1 38 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
0.01 7e-1 36 At3g21300 821684 RNA methyltransferase family protein F:methyltransferase activity, RNA binding, RNA methyltransferase activity;P:RNA processing;C:unknown;BOMFAPV C.G. S.X.
0.02 7e-1 36 At2g04038 814936 AtbZIP48 (Arabidopsis thaliana basic leucine-zipper 48) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOF C.G. S.X.
0.01 7e-1 36 At1g30810 839963 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;MFPO C.G. S.X.
0.03 7e-1 36 At1g56360 842090 PAP6 (PURPLE ACID PHOSPHATASE 6) F:protein serine/threonine phosphatase activity, acid phosphatase activity;P:biological_process unknown;C:endomembrane system;PBOMFA C.G. S.X.
0.02 7e-1 36 At1g65860 842897 FMO GS-OX1 (FLAVIN-MONOOXYGENASE GLUCOSINOLATE S-OXYGENASE 1) belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.22 2e-5 52 Glycine max GmaAffx.81724.1.S1_at BG362878 - - 4e-6 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.14 5e-3 42 Hordeum vulgare Contig9903_at Contig9903 - - 1e-2 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.10 9e-8 59 Oryza sativa Os03g0568900 AK060200.1 - Metallophosphoesterase domain containing protein 6e-8 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.40 1e-21 105 Populus trichocarpa PtpAffx.211221.1.S1_at pmrna22042 hypothetical protein - 1e-21 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.09 3e-3 44 Triticum aestivum Ta.1994.1.S1_a_at BQ166497 - - 3e-3 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.17 2e-19 95 Vitis vinifera 1617288_at CD712122 similar to ATPAP18/PAP18 (purple acid phosphatase 18); acid phosphatase/ protein serine/threonine phosphatase - 7e-19 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
0.11 5e-6 52 Zea mays Zm.3787.1.A1_at BM381328 purple acid phosphatase - 2e-5 At3g20500 PAP18 (PURPLE ACID PHOSPHATASE 18) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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