Gene omics information

Query gene ID At3g20440
Gene name alpha-amylase/ catalytic/ cation binding
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4050.8At3g20440821589alpha-amylase/ catalytic/ cation bindingF:cation binding, catalytic activity, alpha-amylase activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:chloroplast;BPOMFAS.X.H.G.
0.1811.4At1g66520842970pde194 (pigment defective 194)F:hydroxymethyl-, formyl- and related transferase activity, formyltetrahydrofolate deformylase activity, catalytic activity;P:purine ribonucleotide biosynthetic process, biosynthetic process;C:unknown;BOMFPAVS.X.H.G.
0.1811.4At3g58520825021ubiquitin thiolesteraseF:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:intracellular;PS.X.H.G.
0.135.8At5g47460834796pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.092.8At2g40720818667pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:cellular_component unknown;POMFBS.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
114.399.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
95.099.9GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
84.599.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
68.799.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
53.999.8GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-757At2g36390818212SBE2.1 (starch branching enzyme 2.1)Encodes a starch branching enzyme (EC. similar to SBE2 from maize and rice. Expressed throughout plant tissues.C.G.S.X.
0.013e-138At3g45290823667MLO3 (MILDEW RESISTANCE LOCUS O 3)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO3 belongs to the clade IV, with AtMLO2, AtMLO6 and AtMLO12. The gene is expressed during early seedling growth, in primary root and lateral root primordia, in fruit abscission zone, in vascular system of cotyledons and in trichomes of young leaves,; it was not expressed in mature rosette leaves, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(s).C.G.S.X.
0.011e+036At5g51360835210-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e+036At4g03070828100AOP1Encodes a possible 2-oxoglutarate-dependent dioxygenase that is involved in glucosinolate biosynthesis. The gene is expressed in all ecotypes examined but the enzymatic activity has not been determined experimentally. In Col, there is one copy of this gene (aka AOP1.1) but Ler contains two copies, AOP1.1 and a tightly linked AOP1.2.C.G.S.X.
0.011e+036At2g16920816195UBC23 (UBIQUITIN-CONJUGATING ENZYME 23)F:ubiquitin-protein ligase activity, small conjugating protein ligase activity;P:regulation of protein metabolic process, post-translational protein modification;C:cellular_component unknown;MOFBPVAC.G.S.X.
0.011e+036At2g46250819233myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.011e+036At1g58210842188EMB1674 (EMBRYO DEFECTIVE 1674)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;MOFBPAVC.G.S.X.
0.015e+034At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.025e-138Glycine maxGma.2119.1.S1_atBU081878--3e-40At5g03650SBE2.2 (starch branching enzyme 2.2)C.G.S.X.
0.073e-963Hordeum vulgareContig16389_atContig16389--4e-9At3g20440alpha-amylase/ catalytic/ cation bindingC.G.S.X.
0.143e-656Oryza sativaOs06g0367100AK066930.1-Glycoside hydrolase, family 13, N-terminal domaincontaining protein2e-6At3g20440alpha-amylase/ catalytic/ cation bindingC.G.S.X.
0.204e-23111Populus trichocarpaPtpAffx.201260.1.S1_atpmrna2496hypothetical protein-2e-23At3g20440alpha-amylase/ catalytic/ cation bindingC.G.S.X.
0.013e-138Triticum aestivumTaAffx.118353.2.S1_atCA596309--4e+0At3g23255unknown proteinC.G.S.X.
0.014e-136Vitis vinifera1620339_atCB834219--3e-1At3g51260PAD1 (20s proteasome alpha subunit pad1)C.G.S.X.
0.012e-448Zea maysZm.342.2.A1_atU65948.1hypothetical protein LOC100193930 /// starch branching enzyme3-2e-82At5g03650SBE2.2 (starch branching enzyme 2.2)C.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
NGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00001Link to KaPPA-View 4Starch biosynthesis
00412Link to KaPPA-View 4Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage