Gene omics information

Query gene ID At3g20250
Gene name APUM5 (Arabidopsis Pumilio 5)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.168.8At3g20250821569APUM5 (Arabidopsis Pumilio 5)F:RNA binding, binding;P:unknown;C:vacuole;OFMPBS.X.H.G.
0.2930.3At1g22930838900T-complex protein 11F:unknown;P:biological_process unknown;C:unknown;MOBFPAVS.X.H.G.
0.2930.3At2g42890818890AML2 (ARABIDOPSIS-MEI2-LIKE 2)A member of mei2-like gene family, predominantly plant-based family of genes encoding RNA binding proteins with characteristic presence of a highly conserved RNA binding motif first described in the mei2 gene of the fission yeast S. pombe. In silico analyses reveal nine mei2 -like genes in A. thaliana. They were grouped into four distinct clades, based on overall sequence similarity and subfamily-specific sequence elements. AML2 is a member of two sister clades of mei2-like gene family, AML1 through AML5, and belongs to the clade named ALM235. AML2 is expressed during early embryo development (heart and torpedo stage) and predominantly in vegetative organs; no significant accumulation was detected in floral apices.S.X.H.G.
0.061.4At5g57900835901SKIP1 (SKP1 INTERACTING PARTNER 1)F-box protein, interacts with SKP1/ASK1 subunit of SCF ubiquitin ligase in a glucose-dependent mannerS.X.H.G.
0.051.1At4g38060829962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
65.799.8GSM133304RIKEN-NAKABAYASHI1BGSE5700AtGenExpress: Effect of ABA during seed imbibition
51.499.8GSM269821WT leaf-drought-rep2GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
47.799.8GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
43.699.8GSM269829WT leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
38.299.8GSM133303RIKEN-NAKABAYASHI1AGSE5700AtGenExpress: Effect of ABA during seed imbibition
37.699.7GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
33.699.7GSM269819C2 leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
33.199.7GSM142625MC002_ATH1_A1.3-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
32.499.7GSM142623MC002_ATH1_A1.1-dubos-wtxGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
30.399.7GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-656At2g29200817469APUM1 (Arabidopsis Pumilio 1)F:RNA binding, binding;P:unknown;C:cellular_component unknown;FOMPC.G.S.X.
0.052e-656At2g29140817463APUM3 (Arabidopsis Pumilio 3)F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPBC.G.S.X.
0.054e-448At4g25880828694APUM6 (Arabidopsis Pumilio 6)F:RNA binding, binding;P:unknown;C:chloroplast;MFOPBC.G.S.X.
0.054e-448At2g29190817468APUM2 (Arabidopsis Pumilio 2)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPBC.G.S.X.
0.029e-240At5g45350834571proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBFOVAC.G.S.X.
0.019e-240At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.089e-1273Glycine maxGmaAffx.76231.1.S1_atBE209679--4e-7At4g25880APUM6 (Arabidopsis Pumilio 6)C.G.S.X.
0.043e-344Hordeum vulgareContig10288_atContig10288--8e-12At2g29200APUM1 (Arabidopsis Pumilio 1)C.G.S.X.
0.091e-1483Oryza sativaOs08g0519800AK064999.1-Pumilio RBD (Fragment)9e-15At3g20250APUM5 (Arabidopsis Pumilio 5)C.G.S.X.
0.072e-346Populus trichocarpaPtpAffx.215313.1.S1_atpmrna29431hypothetical protein-5e-4At3g20250APUM5 (Arabidopsis Pumilio 5)C.G.S.X.
0.076e-344Triticum aestivumTa.6236.1.S1_a_atBQ842099--2e-4At4g25880APUM6 (Arabidopsis Pumilio 6)C.G.S.X.
0.153e-1479Vitis vinifera1622342_atCB976993--4e-20At4g25880APUM6 (Arabidopsis Pumilio 6)C.G.S.X.
0.083e-654Zea maysZm.4380.1.S1_atAY105814.1Hypothetical protein LOC100193145-5e-7At2g29140APUM3 (Arabidopsis Pumilio 3)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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