CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g20210

Gene name DELTA-VPE

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. S.X. H.G.
0.89 94.6 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter S.X. H.G.
0.88 94.0 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV S.X. H.G.
0.88 94.0 At2g46960 819310 CYP709B1 member of CYP709B S.X. H.G.
0.82 90.9 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. S.X. H.G.
0.80 89.8 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. S.X. H.G.
0.75 86.9 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB S.X. H.G.
0.73 85.5 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF S.X. H.G.
0.61 76.7 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
431.2 100.0 GSM10480 lec1-1 Cotyledon Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
335.6 100.0 GSM10479 lec1-1 Cotyledon Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
331.4 100.0 GSM10448 WT Cotyledon Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
324.5 100.0 GSM133820 Yang_1-5_young-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
221.1 100.0 GSM10449 WT Cotyledon Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
191.8 100.0 E-MEXP-285-raw-cel-440783152
191.2 100.0 GSM147965 lec1-1 Globular Stage Seed 1 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
176.1 100.0 GSM147966 lec1-1 Globular Stage Seed 2 GSE1051 Seed development in LEAFY COTYLEDON1 mutants
163.0 99.9 GSM147964 WT Globular Stage Seed 2 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
147.0 99.9 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 8e-10 65 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. C.G. S.X.
0.05 3e-6 54 At2g25940 817135 ALPHA-VPE (alpha-vacuolar processing enzyme) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. C.G. S.X.
0.04 7e-4 46 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. C.G. S.X.
0.02 4e-2 40 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV C.G. S.X.
0.01 7e-1 36 At4g15400 827208 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB C.G. S.X.
0.02 7e-1 36 At3g56910 824858 PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5) F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PM C.G. S.X.
0.01 7e-1 36 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. C.G. S.X.
0.01 7e-1 36 At1g49670 841391 NQR molecular function has not been defined. Was shown involved in oxidative stress tolerance. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.08 3e-16 87 Glycine max Gma.1756.1.S1_at BF324935 vacuolar processing enzyme 2 - 2e-66 At2g25940 ALPHA-VPE (alpha-vacuolar processing enzyme) C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig3369_s_at Contig3369 - - 2e-3 At4g32940 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.04 9e-2 40 Oryza sativa Os02g0644000 AB081464.1 - C13 endopeptidase NP1 (Fragment) 2e-23 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.06 1e-9 65 Populus trichocarpa PtpAffx.207475.1.S1_at pmrna14841 hypothetical protein - 1e-14 At4g32940 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.04 1e-5 52 Triticum aestivum Ta.14496.1.S1_x_at CK203323 - - 2e-8 At4g32940 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1617929_at CF403754 hypothetical protein LOC100254761 - 3e-1 At4g32870 unknown protein C.G. S.X.
0.04 3e-4 46 Zea mays Zm.12714.1.S1_at AY106221.1 vacuolar processing enzyme, beta-isozyme - 3e-7 At1g62710 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010214 The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
X GO:0012501 Cell death resulting from activation of endogenous cellular processes.
C GO:0006624 The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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