Gene omics information

Query gene ID At3g20210
Gene name DELTA-VPE
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g20210821565DELTA-VPEEncodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.S.X.H.G.
0.8994.6At4g26590828766OPT5 (OLIGOPEPTIDE TRANSPORTER 5)oligopeptide transporterS.X.H.G.
0.8894.0At1g56100842062pectinesterase inhibitor domain-containing proteinF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAVS.X.H.G.
0.8894.0At2g46960819310CYP709B1member of CYP709BS.X.H.G.
0.8290.9At1g61720842469BAN (BANYULS)Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.S.X.H.G.
0.8089.8At5g49180834977pectinesterase family proteinEncodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.S.X.H.G.
0.7586.9At1g71690843495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBS.X.H.G.
0.7385.5At4g12890826901gamma interferon responsive lysosomal thiol reductase family protein / GILT family proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOFS.X.H.G.
0.6176.7At1g10540837595xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:membrane;BOMPFAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
431.2100.0GSM10480lec1-1 Cotyledon Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
335.6100.0GSM10479lec1-1 Cotyledon Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
331.4100.0GSM10448WT Cotyledon Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
324.5100.0GSM133820Yang_1-5_young-pod_Rep3_ATH1GSE5736To identify changes in gene expression during silique senescence in Arabidopsis thaliana
221.1100.0GSM10449WT Cotyledon Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
191.8100.0E-MEXP-285-raw-cel-440783152
191.2100.0GSM147965lec1-1 Globular Stage Seed 1GSE1051Seed development in LEAFY COTYLEDON1 mutants
176.1100.0GSM147966lec1-1 Globular Stage Seed 2GSE1051Seed development in LEAFY COTYLEDON1 mutants
163.099.9GSM147964WT Globular Stage Seed 2GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
147.099.9GSM147963WT Globular Stage Seed 1GSE680Transcript Profiling of Arabidopsis Plant Life Cycle
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.068e-1065At1g62710842569BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.C.G.S.X.
0.053e-654At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.C.G.S.X.
0.047e-446At4g32940829431GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.C.G.S.X.
0.024e-240At2g36650818237-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAVC.G.S.X.
0.017e-136At4g15400827208transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFBC.G.S.X.
0.027e-136At3g56910824858PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PMC.G.S.X.
0.017e-136At1g78970844237LUP1 (LUPEOL SYNTHASE 1)Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.C.G.S.X.
0.017e-136At1g49670841391NQRmolecular function has not been defined. Was shown involved in oxidative stress tolerance.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.083e-1687Glycine maxGma.1756.1.S1_atBF324935vacuolar processing enzyme 2-2e-66At2g25940ALPHA-VPE (alpha-vacuolar processing enzyme)C.G.S.X.
0.023e-136Hordeum vulgareContig3369_s_atContig3369--2e-3At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.049e-240Oryza sativaOs02g0644000AB081464.1-C13 endopeptidase NP1 (Fragment)2e-23At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.061e-965Populus trichocarpaPtpAffx.207475.1.S1_atpmrna14841hypothetical protein-1e-14At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.041e-552Triticum aestivumTa.14496.1.S1_x_atCK203323--2e-8At4g32940GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)C.G.S.X.
0.028e-134Vitis vinifera1617929_atCF403754hypothetical protein LOC100254761-3e-1At4g32870unknown proteinC.G.S.X.
0.043e-446Zea maysZm.12714.1.S1_atAY106221.1vacuolar processing enzyme, beta-isozyme-3e-7At1g62710BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0010214The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure.
XGO:0012501Cell death resulting from activation of endogenous cellular processes.
CGO:0006624The posttranslational modification of proteins in the vacuole, including proteolytic cleavage of precursors to form active enzymes.
CGO:0006508The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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