CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g20100

Gene name CYP705A19

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g20100 821553 CYP705A19 member of CYP705A S.X. H.G.
0.28 30.3 At1g77260 844062 dehydration-responsive protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PBOM S.X. H.G.
0.22 17.5 At2g35620 818130 FEI2 (FEI 2) Encodes a plasma membrane localized leucine-rich repeat receptor kinase that is involved in cell wall elongation. Loss of function mutations of FEI1 and FEI2 exhibit defects in root and hypocotyl cell elongation. Double mutants are defective in cell wall biosynthesis and have thick hypocotyls, and short, thick roots. S.X. H.G.
0.20 14.4 At4g35880 829742 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to membrane;PMFO S.X. H.G.
0.20 14.4 At5g43600 834380 UAH (UREIDOGLYCOLATE AMIDOHYDROLASE) Encodes a protein that is 27% identical and 43% similar to the E. coli allantoate amidohydrolase. In vitro assays with purified protein and allantoate as a substrate do not show any increase in ammonium concentration, no AAH activity. S.X. H.G.
0.16 8.8 At3g19640 821501 magnesium transporter CorA-like family protein (MRS2-3) F:metal ion transmembrane transporter activity;P:metal ion transport;C:plasma membrane, membrane;PFMOB S.X. H.G.
0.15 7.8 At3g28050 822429 nodulin MtN21 family protein F:unknown;P:biological_process unknown;C:endomembrane system, membrane;PBOAFM S.X. H.G.
0.13 5.8 At2g39750 818560 dehydration-responsive family protein F:unknown;P:biological_process unknown;C:unknown;PMOBFVA S.X. H.G.
0.12 4.9 At1g53280 841762 DJ-1 family protein F:unknown;P:biological_process unknown;C:chloroplast;BMOAPF S.X. H.G.
0.10 3.4 At1g54340 841875 ICDH (ISOCITRATE DEHYDROGENASE) NADP-specific isocitrate dehydrogenase (ICDH) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
112.6 99.9 GSM311295 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 1 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
102.7 99.9 GSM284397 Arabidopsis GGSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
88.5 99.9 GSM284398 Arabidopsis GGSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
63.3 99.8 GSM311296 Laser capture microdissected (LCM) general seed coat at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
59.7 99.8 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
52.3 99.8 GSM133821 Yang_1-6_old-pod_Rep3_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
47.5 99.8 GSM311284 Laser capture microdissected (LCM) general seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
45.4 99.8 GSM147963 WT Globular Stage Seed 1 GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
45.3 99.8 E-MEXP-285-raw-cel-440783213
41.5 99.8 E-MEXP-285-raw-cel-440783152
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.60 2e-118 426 At3g20120 821555 CYP705A21 member of CYP705A C.G. S.X.
0.52 4e-98 359 At3g20130 821556 CYP705A22 member of CYP705A C.G. S.X.
0.61 8e-78 291 At3g20940 821644 CYP705A30 a member of A-type cytochrome P450 C.G. S.X.
0.50 2e-72 274 At3g20090 821552 CYP705A18 member of CYP705A C.G. S.X.
0.48 3e-68 260 At3g20960 821646 CYP705A33 member of CYP705A C.G. S.X.
0.68 7e-66 252 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. C.G. S.X.
0.54 1e-61 238 At2g05180 815066 CYP705A6 member of CYP705A C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e-1 38 Glycine max Gma.18015.2.S1_at BM527755 - - 7e-2 At3g20100 CYP705A19 C.G. S.X.
0.03 2e-2 40 Hordeum vulgare Contig25605_at Contig25605 - - 7e-2 At1g15790 unknown protein C.G. S.X.
0.02 2e-6 56 Oryza sativa Os02g0529800 9630.m03109 - Cytochrome P450 family protein 3e-3 At2g24180 CYP71B6 (CYTOCHROME P450 71B6) C.G. S.X.
0.02 7e-2 40 Populus trichocarpa PtpAffx.133870.1.A1_at CV258749 cytochrome P450 - 6e-1 At2g28370 - C.G. S.X.
0.03 5e-2 40 Triticum aestivum TaAffx.86019.1.S1_at CA617557 - - 1e-2 At3g20100 CYP705A19 C.G. S.X.
0.02 6e-2 38 Vitis vinifera 1612464_at CF208027 hypothetical protein LOC100257926 - 2e-9 At1g64930 CYP89A7 C.G. S.X.
0.03 2e-2 40 Zea mays Zm.14226.1.A1_at BM337251 hypothetical protein LOC100273457 - 3e-2 At3g20100 CYP705A19 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00347 Cytochrome P450

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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