Gene omics information

Query gene ID At3g19820
Gene name DWF1 (DWARF 1)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7788.0At3g19820821519DWF1 (DWARF 1)Involved in the conversion of the early brassinosteroid precursor 24-methylenecholesterol to campesterol. Brassinosteroids affect cellular elongation. Mutants have dwarf phenotype. DWF1 is a Ca2+-dependent calmodulin-binding protein.S.X.H.G.
0.6075.7At3g56130824779biotin/lipoyl attachment domain-containing proteinF:binding;P:unknown;C:chloroplast;BOPAFS.X.H.G.
0.5065.3At2g05990815152MOD1 (MOSAIC DEATH 1)Encodes enoyl-ACP reductase a component of the fatty acid synthase complex. A reduced function mutation in this gene, mod1, was found in a screen for premature cell death mutants. Mutant plants have reduced lipid level and pleiotropic morphological defects, including chlorotic and abnormally shaped leaves.S.X.H.G.
0.4050.8At5g35360833497CAC2Encodes biotin carboxylase subunit (CAC2).S.X.H.G.
0.1811.4At5g50375835105CPI1 (CYCLOPROPYL ISOMERASE)Converts pentacyclic cyclopropyl sterols to conventional tetracyclic sterols. CPI1 function during and just after division and support gravitropism by establishing polar PIN2 localization. Required for endocytosis of PIN2S.X.H.G.
0.051.1At1g11680837712CYP51G1 (CYTOCHROME P450 51G1)putative obtusifoliol 14-alpha demethylase involved in sterol biosynthesis.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
9.399.1GSM265428Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.999.0GSM252691Section of Root from 270 mm to 340 mm harvested immediately rep2GSE9996Organ regeneration in plants is independent of stem cell niche activity
8.899.0GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.899.0GSM133118RIKEN-YAMAUCHI1BGSE5687AtGenExpress: Different temperature treatment of seeds
8.599.0GSM265421Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.399.0GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
8.098.9GSM311290Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
8.098.9GSM133981Birnbaum_1-11_StageII-4_Rep4_ATH1GSE5749A gene expression map of the Arabidopsis root
7.898.9GSM252690Section of Root from 270 mm to 340 mm harvested immediately rep1GSE9996Organ regeneration in plants is independent of stem cell niche activity
7.598.8GSM265418Arabidopsis, root, longitudinal zone 1, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.025e-240At1g31250840013proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVAC.G.S.X.
0.022e-138At5g02770831253unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPFC.G.S.X.
0.012e-138At5g07760830669formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:chloroplast;MPBOFVAC.G.S.X.
0.012e-138At1g29370839812kinase-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.012e-138At1g29350839809-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVC.G.S.X.
0.018e-136At5g67480836884BT4 (BTB AND TAZ DOMAIN PROTEIN 4)BTB and TAZ domain protein. Located in cytoplasm and expressed in fruit, flower and leaves.C.G.S.X.
0.018e-136At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.394e-68260Glycine maxGmaAffx.79052.1.S1_atBG726168--2e-68At3g19820DWF1 (DWARF 1)C.G.S.X.
0.271e-50200Hordeum vulgareContig5362_atContig5362--3e-50At3g19820DWF1 (DWARF 1)C.G.S.X.
0.272e-28129Oryza sativaOs10g0397400AK111949.1-Cell elongation protein DIMINUTO (Cell elongationprotein Dwarf1)1e-28At3g19820DWF1 (DWARF 1)C.G.S.X.
0.516e-92339Populus trichocarpaPtpAffx.209173.1.S1_atpmrna18160hypothetical protein-5e-92At3g19820DWF1 (DWARF 1)C.G.S.X.
0.283e-50200Triticum aestivumTa.28334.1.S1_atBJ283981--3e-50At3g19820DWF1 (DWARF 1)C.G.S.X.
0.202e-57222Vitis vinifera1616409_atCB981265hypothetical protein LOC100258158-5e-57At3g19820DWF1 (DWARF 1)C.G.S.X.
0.304e-41169Zea maysZm.6146.1.A1_atCD989568brassinosteroid biosynthesis-like protein-1e-40At3g19820DWF1 (DWARF 1)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006694The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification.
XGO:0009416A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light.
XGO:0009826The process by which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell.
XGO:0016132The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00049Link to KaPPA-View 4Sterol Biosynthesis



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00100Link to KEGG PATHWAYSteroid biosynthesis
01062Link to KEGG PATHWAYBiosynthesis of terpenoids and steroids
01066Link to KEGG PATHWAYBiosynthesis of alkaloids derived from terpenoid and polyketide
01070Link to KEGG PATHWAYBiosynthesis of plant hormones
01100Link to KEGG PATHWAYMetabolic pathways
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