Gene omics information

Query gene ID At3g19660
Gene name unknown protein
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At3g19660821503unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.3541.6At3g51440824307strictosidine synthase family proteinF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endoplasmic reticulum;BPMOFAS.X.H.G.
0.3133.8At1g65690842880harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PS.X.H.G.
0.1710.2At3g13790820591ATBFRUCT1Encodes a protein with invertase activity.S.X.H.G.
0.168.8At1g45145841082ATTRX5encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.S.X.H.G.
0.157.8At1g14070837967FUT7member of Xyloglucan fucosyltransferase familyS.X.H.G.
0.157.8At3g51890824352protein binding / structural moleculeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:clathrin coat of trans-Golgi network vesicle, clathrin coat of coated pit;MPFOBS.X.H.G.
0.135.8At4g26060828712unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.124.9At1g14870838052-F:molecular_function unknown;P:response to oxidative stress;C:plasma membrane;PMFOS.X.H.G.
0.114.1At1g09560837482GLP5 (GERMIN-LIKE PROTEIN 5)germin-like protein (GLP5)S.X.H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
66.799.8GSM184932Arabidopsis, whole roots, 140 mM NaCl, 4 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
63.999.8GSM216981Vector_shoots_4h_GA4+DEX_repl2GSE8741DELLA protein direct targets in Arabidopsis
61.399.8GSM216973Vector_shoots_4h_GA4+DEX_repl1GSE8741DELLA protein direct targets in Arabidopsis
44.699.8GSM179969Arabidopsis aux1 mutant roots, ethylene treatment, replica 1GSE7432Ethylene and auxin interactions in the roots of Arabidopsis seedlings
38.999.8GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
35.899.7GSM184934Arabidopsis, whole roots, 140 mM NaCl, 16 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
31.999.7GSM173446oxt6 mutant, biological rep2GSE7211A polyadenylation factor subunit implicated in regulating oxidative stress responses in Arabidopsis thaliana
31.599.7GSM184930Arabidopsis, whole roots, 140 mM NaCl, 1 hour, replicate 2GSE7642Time course expression analysis of the salt stress response in Arabidopsis roots
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.049e-236At5g59560836075SRR1 (SENSITIVITY TO RED LIGHT REDUCED 1)Encodes a novel protein conserved in higher eukaryotes. Normal function of the protein is required for normal oscillator function during circadian rhythm. Mutant analyses also suggest a role in phytochrome B (phyB)-mediated light signaling.C.G.S.X.
0.029e-236At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVC.G.S.X.
0.029e-236At4g37740829930AtGRF2 (GROWTHREGULATING FACTOR 2)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerC.G.S.X.
0.039e-236At3g45080823643sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MOPBFC.G.S.X.
0.029e-236At2g01720814701ribophorin I family proteinF:oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity;P:protein amino acid glycosylation;C:endoplasmic reticulum, plasma membrane, plant-type cell wall;MFOPC.G.S.X.
0.014e-134At5g43530834373SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing proteinF:in 8 functions;P:unknown;C:chloroplast envelope;MBOFPVAC.G.S.X.
0.024e-134At5g51770835251protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVAC.G.S.X.
0.024e-134At5g01370831905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVC.G.S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.061e-136Glycine maxGmaAffx.20465.1.A1_atCD412226--2e-1At3g19660unknown proteinC.G.S.X.
0.067e-132Hordeum vulgareHA09l22r_atHA09l22r--7e-1At5g26720unknown proteinC.G.S.X.
0.043e+032Oryza sativaOs08g01515009636.m00483-Conserved hypothetical protein3e-1At5g19875unknown proteinC.G.S.X.
0.045e-134Populus trichocarpaPtpAffx.24406.3.A1_atCV260911hypothetical protein-2e-14At4g31300PBA1C.G.S.X.
0.074e-134Triticum aestivumTaAffx.92211.1.A1_x_atBJ276129--5e-1At3g19660unknown proteinC.G.S.X.
0.071e-134Vitis vinifera1609001_atCB977196hypothetical protein LOC100258330-1e+0At3g19660unknown proteinC.G.S.X.
0.046e-132Zea maysZm.11807.1.A1_atBM380906--8e-2At1g68585unknown proteinC.G.S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage