CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19650

Gene name cyclin-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.89 94.6 At3g19650 821502 cyclin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV S.X. H.G.
0.89 94.6 At3g02760 820930 ATP binding / aminoacyl-tRNA ligase/ histidine-tRNA ligase/ nucleotide binding F:histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:chloroplast, cytoplasm;OBMFAP S.X. H.G.
0.80 89.8 At1g47970 841215 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOFBPVA S.X. H.G.
0.75 86.9 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.53 68.6 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
235.8 100.0 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
218.4 100.0 GSM284395 Arabidopsis GPSc1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
188.5 100.0 GSM284385 Arabidopsis GEP6 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
180.9 100.0 GSM284384 Arabidopsis GEP5 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
156.9 99.9 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
145.1 99.9 GSM311282 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
132.4 99.9 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
129.9 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
124.9 99.9 GSM311278 Laser capture microdissected (LCM) peripheral endosperm at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
112.7 99.9 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-2 40 At4g02670 828206 AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF C.G. S.X.
0.01 1e-1 38 At5g24810 832550 ABC1 family protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;BOMFPAV C.G. S.X.
0.02 4e-1 36 At5g03830 831702 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MFOP C.G. S.X.
0.02 4e-1 36 At1g20740 838664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMF C.G. S.X.
0.01 2e+0 34 At5g13130 831152 ATP binding F:ATP binding;P:biological_process unknown;C:cellular_component unknown;MOPVBFA C.G. S.X.
0.01 2e+0 34 At5g27470 832806 seryl-tRNA synthetase / serine--tRNA ligase F:serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, seryl-tRNA aminoacylation;C:cytosol;OBMFAP C.G. S.X.
0.01 2e+0 34 At3g04480 819604 endoribonuclease F:endoribonuclease activity;P:biological_process unknown;C:endomembrane system;BOMAFP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 34 Glycine max HgAffx.1015.1.A1_at CK349116 - - 1e+0 At3g19650 cyclin-related C.G. S.X.
0.05 9e-1 34 Hordeum vulgare HVSMEm0005P18r2_s_at HVSMEm0005P18r2 - - 1e+0 At3g19650 cyclin-related C.G. S.X.
0.03 4e+0 34 Oryza sativa Os04g0333600 9632.m02504 - - 8e-1 At3g03826 unknown protein C.G. S.X.
0.03 3e+0 34 Populus trichocarpa PtpAffx.206482.1.S1_at pmrna12857 hypothetical protein - 4e-11 At3g58000 VQ motif-containing protein C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.5962.1.A1_at BJ299955 - - 3e-1 At3g19650 cyclin-related C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1619886_at CF414305 - - 5e+0 At5g58590 RANBP1 (RAN BINDING PROTEIN 1) C.G. S.X.
0.02 3e+0 32 Zea mays Zm.1385.1.A1_at CF628524 hypothetical protein LOC100273765 - 6e-6 At5g17610 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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