CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19620

Gene name glycosyl hydrolase family 3 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g19620 821499 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall;BOFPAM S.X. H.G.
0.33 38.1 At3g55710 824737 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF S.X. H.G.
0.25 22.6 At1g62030 842498 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO S.X. H.G.
0.18 11.4 At5g15310 831383 ATMYB16 (MYB DOMAIN PROTEIN 16) Member of the R2R3 factor gene family. S.X. H.G.
0.04 0.9 At2g46870 819300 NGA1 (NGATHA1) F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;P S.X. H.G.
0.04 0.9 At2g28470 817395 BGAL8 (beta-galactosidase 8) putative beta-galactosidase (BGAL8 gene) S.X. H.G.
0.03 0.6 At4g22200 828311 AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3) Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
291.6 100.0 GSM67087 Arabidopsis_Stigma03 GSE3056 Arabidopsis Pollination Study
182.8 100.0 GSM67086 Arabidopsis_Stigma02 GSE3056 Arabidopsis Pollination Study
154.6 99.9 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
129.1 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
97.3 99.9 GSM131299 AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1 GSE5622 AtGenExpress: Stress Treatments (Osmotic stress)
96.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
88.0 99.9 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.9 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
87.0 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
76.4 99.9 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 2e-11 71 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. C.G. S.X.
0.07 8e-8 59 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. C.G. S.X.
0.07 3e-4 48 At5g09730 830833 BXL3 (beta-xylosidase 3) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. C.G. S.X.
0.03 3e-4 48 At5g10560 830921 glycosyl hydrolase family 3 protein F:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAM C.G. S.X.
0.01 2e-2 42 At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P C.G. S.X.
0.01 3e-1 38 At4g30550 829178 glutamine amidotransferase class-I domain-containing protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;OBAFPM C.G. S.X.
0.01 3e-1 38 At3g22220 821786 hAT dimerisation domain-containing protein F:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POM C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-4 48 Glycine max GmaAffx.50714.1.S1_at BE021980 - - 4e-10 At5g64570 XYL4 C.G. S.X.
0.02 6e-4 46 Hordeum vulgare Contig7032_at Contig7032 - - 1e-7 At5g64570 XYL4 C.G. S.X.
0.03 1e-1 40 Oryza sativa Os11g0297800 AK109882.1 - Glycoside hydrolase, family 3, N-terminal domaincontaining protein 9e-2 At3g19620 glycosyl hydrolase family 3 protein C.G. S.X.
0.20 2e-15 85 Populus trichocarpa PtpAffx.201187.1.S1_at pmrna2351 - - 1e-15 At3g19620 glycosyl hydrolase family 3 protein C.G. S.X.
0.02 8e-2 40 Triticum aestivum Ta.1764.2.S1_a_at CA640254 - - 4e+0 At4g09450 myb family transcription factor C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1616068_at CF403455 - - 5e-7 At1g78060 glycosyl hydrolase family 3 protein C.G. S.X.
0.01 2e+0 34 Zea mays Zm.12358.1.S1_at CO534920 hypothetical protein LOC100274476 - 1e+0 At3g01050 MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage