Gene omics information

Query gene ID At3g19620
Gene name glycosyl hydrolase family 3 protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g19620821499glycosyl hydrolase family 3 proteinF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall;BOFPAMS.X.H.G.
0.3338.1At3g55710824737UDP-glucoronosyl/UDP-glucosyl transferase family proteinF:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOFS.X.H.G.
0.2522.6At1g62030842498DC1 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.1811.4At5g15310831383ATMYB16 (MYB DOMAIN PROTEIN 16)Member of the R2R3 factor gene family.S.X.H.G.
0.040.9At2g46870819300NGA1 (NGATHA1)F:transcription factor activity;P:flower development, leaf development;C:cellular_component unknown;PS.X.H.G.
0.040.9At2g28470817395BGAL8 (beta-galactosidase 8)putative beta-galactosidase (BGAL8 gene)S.X.H.G.
0.030.6At4g22200828311AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
291.6100.0GSM67087Arabidopsis_Stigma03GSE3056Arabidopsis Pollination Study
182.8100.0GSM67086Arabidopsis_Stigma02GSE3056Arabidopsis Pollination Study
154.699.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
129.199.9GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
97.399.9GSM131299AtGen_6-2511_Osmoticstress-Shoots-12.0h_Rep1GSE5622AtGenExpress: Stress Treatments (Osmotic stress)
96.599.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
88.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
87.999.9GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
87.099.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
76.499.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-1171At1g02640837940BXL2 (BETA-XYLOSIDASE 2)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.C.G.S.X.
0.078e-859At5g49360834996BXL1 (BETA-XYLOSIDASE 1)Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.C.G.S.X.
0.073e-448At5g09730830833BXL3 (beta-xylosidase 3)encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.C.G.S.X.
0.033e-448At5g10560830921glycosyl hydrolase family 3 proteinF:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, vacuole;BOFPAMC.G.S.X.
0.012e-242At5g05270830409chalcone-flavanone isomerase family proteinF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;PC.G.S.X.
0.013e-138At4g30550829178glutamine amidotransferase class-I domain-containing proteinF:catalytic activity;P:biological_process unknown;C:endomembrane system;OBAFPMC.G.S.X.
0.013e-138At3g22220821786hAT dimerisation domain-containing proteinF:protein dimerization activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;POMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-448Glycine maxGmaAffx.50714.1.S1_atBE021980--4e-10At5g64570XYL4C.G.S.X.
0.026e-446Hordeum vulgareContig7032_atContig7032--1e-7At5g64570XYL4C.G.S.X.
0.031e-140Oryza sativaOs11g0297800AK109882.1-Glycoside hydrolase, family 3, N-terminal domaincontaining protein9e-2At3g19620glycosyl hydrolase family 3 proteinC.G.S.X.
0.202e-1585Populus trichocarpaPtpAffx.201187.1.S1_atpmrna2351--1e-15At3g19620glycosyl hydrolase family 3 proteinC.G.S.X.
0.028e-240Triticum aestivumTa.1764.2.S1_a_atCA640254--4e+0At4g09450myb family transcription factorC.G.S.X.
0.023e-136Vitis vinifera1616068_atCF403455--5e-7At1g78060glycosyl hydrolase family 3 proteinC.G.S.X.
0.012e+034Zea maysZm.12358.1.S1_atCO534920hypothetical protein LOC100274476-1e+0At3g01050MUB1 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 1 PRECURSOR)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005975The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00412Link to KaPPA-View 4Glycoside Hydrolase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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