CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19430

Gene name late embryogenesis abundant protein-related / LEA protein-related

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.51 66.3 At3g19430 821477 late embryogenesis abundant protein-related / LEA protein-related F:structural constituent of cell wall;P:unknown;C:unknown;MBOFPVA S.X. H.G.
0.89 94.6 At1g48070 841225 - F:molecular_function unknown;P:cell redox homeostasis;C:cellular_component unknown;BPO S.X. H.G.
0.87 93.5 At3g55550 824720 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA S.X. H.G.
0.86 93.1 At4g34970 829649 ADF9 (ACTIN DEPOLYMERIZING FACTOR 9) F:actin binding;P:biological_process unknown;C:intracellular;MPOF S.X. H.G.
0.84 91.9 At5g51470 835221 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;POBMF S.X. H.G.
0.83 91.4 At1g26680 839209 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:chloroplast;POBM S.X. H.G.
0.82 90.9 At2g04025 814929 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At1g04610 839474 flavin-containing monooxygenase / FMO (YUCCA3) F:oxidoreductase activity;P:auxin biosynthetic process;C:unknown;BOFMPA S.X. H.G.
0.80 89.8 At3g01840 820047 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, cell wall macromolecule catabolic process;C:endomembrane system;MPOFBVA S.X. H.G.
0.79 89.1 At4g26880 828795 stigma-specific Stig1 family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPOFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
586.6 100.0 GSM266667 Arabidopsis, root cells, columella root cap, -Fe, replicate 2 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
470.5 100.0 GSM266668 Arabidopsis, root cells, columella root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
404.9 100.0 GSM184892 Arabidopsis, root cells, columella root cap, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
389.6 100.0 GSM266666 Arabidopsis, root cells, columella root cap, -Fe, replicate 1 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
179.9 100.0 GSM184893 Arabidopsis, root cells, columella root cap, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
175.0 100.0 GSM184911 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
161.2 99.9 GSM184894 Arabidopsis, root cells, columella root cap, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
160.1 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
154.5 99.9 GSM184910 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
141.4 99.9 GSM184912 Arabidopsis, root cells, columella root cap, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.00 3e-3 44 At2g45540 819162 WD-40 repeat family protein / beige-related F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBFOPA C.G. S.X.
0.01 5e-2 40 At1g73130 843644 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFPV C.G. S.X.
0.02 2e-1 38 At1g54890 841928 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 8e-1 36 At4g03110 828090 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFBA C.G. S.X.
0.01 8e-1 36 At1g69360 843268 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF C.G. S.X.
0.01 3e+0 34 At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB C.G. S.X.
0.01 3e+0 34 At5g51920 835267 catalytic/ pyridoxal phosphate binding F:pyridoxal phosphate binding, catalytic activity;P:biological_process unknown;C:chloroplast;BOPMFA C.G. S.X.
0.01 3e+0 34 At5g42010 834206 WD-40 repeat family protein F:signal transducer activity;P:signal transduction, response to salt stress;C:heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.01 3e+0 34 At5g52510 835327 scarecrow-like transcription factor 8 (SCL8) F:transcription factor activity;P:regulation of transcription;C:nucleus, cytoplasm;POFMB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max GmaAffx.88397.1.S1_at CA819333 - - 9e-1 At5g41520 40S ribosomal protein S10 (RPS10B) C.G. S.X.
0.02 2e+0 34 Hordeum vulgare HVSMEn0017G01f_s_at HVSMEn0017G01f - - 3e+0 At4g29160 SNF7.1 C.G. S.X.
0.06 4e-1 38 Oryza sativa Os01g0968300 AK122054.1 - Root cap family protein 2e-1 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.11 6e-18 93 Populus trichocarpa PtpAffx.204686.1.S1_at pmrna9231 hypothetical protein - 2e-18 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 3e+0 34 Triticum aestivum Ta.8784.1.S1_at CD452671 - - 3e+0 At3g19430 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
0.03 2e-2 40 Vitis vinifera 1610654_at BQ793239 hypothetical protein LOC100247382 - 6e-2 At3g44950 glycine-rich protein C.G. S.X.
0.04 1e+0 34 Zea mays Zm.52.1.A1_at AB021175.1 root cap protein 1 - 2e+0 At5g60520 late embryogenesis abundant protein-related / LEA protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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