CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19400

Gene name cysteine proteinase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g19400 821474 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF S.X. H.G.
0.43 55.3 At1g10350 837574 DNAJ heat shock protein, putative F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV S.X. H.G.
0.34 39.8 At3g62370 825410 unknown protein F:unknown;P:unknown;C:endomembrane system;P S.X. H.G.
0.32 35.7 At3g07690 819960 NAD or NADH binding / binding / catalytic/ coenzyme binding / glycerol-3-phosphate dehydrogenase (NAD+)/ oxidoreductase/ oxidoreductase, acting on CH-OH group of donors / oxidoreductase, acting on the CH-OH group of donors, NAD or NADP as acceptor F:in 8 functions;P:glycerol-3-phosphate catabolic process, glycerol-3-phosphate metabolic process, carbohydrate metabolic process, metabolic process;C:glycerol-3-phosphate dehydrogenase complex, cytoplasm;BOMPFA S.X. H.G.
0.30 32.1 At4g17270 827441 Mo25 family protein F:binding;P:biological_process unknown;C:plasma membrane;MFPO S.X. H.G.
0.29 30.3 At1g01800 839259 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:plant-type cell wall;BOMFPA S.X. H.G.
0.29 30.3 At3g13360 820536 WIP3 (WPP-domain Interacting Protein 3) F:molecular_function unknown;P:biological_process unknown;C:nuclear envelope;OPMFB S.X. H.G.
0.28 30.3 At5g46630 834706 clathrin adaptor complexes medium subunit family protein clathrin adaptor complexes medium subunit family protein, contains Pfam profile: PF00928 adaptor complexes medium subunit family; similar to micro-adaptins of clathrin coated vesicle adaptor complexes S.X. H.G.
0.28 30.3 At5g56610 835762 dual specificity protein phosphatase family protein F:phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:cellular_component unknown;MOBPFAV S.X. H.G.
0.27 26.2 At3g61540 825327 peptidase family protein F:peptidase activity, aminopeptidase activity;P:proteolysis;C:vacuole;BOFPM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.2 99.9 GSM184477 Lateral Root Cap root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
60.5 99.8 GSM184483 Lateral Root Cap root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
45.0 99.8 GSM184480 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.3 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
30.3 99.7 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
24.8 99.6 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.8 99.6 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
20.8 99.6 GSM184481 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
19.2 99.6 GSM184520 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.7 99.5 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.58 8e-102 371 At3g19390 821473 cysteine proteinase, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF C.G. S.X.
0.26 2e-31 137 At3g43960 823513 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:anchored to membrane;MOPVBAF C.G. S.X.
0.13 2e-12 73 At5g43060 834321 cysteine proteinase, putative / thiol protease, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:response to salt stress;C:vacuole;MOPVBAF C.G. S.X.
0.09 2e-10 67 At3g48350 823993 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
0.09 4e-8 59 At1g47128 841122 RD21 (responsive to dehydration 21) cysteine proteinase precursor-like protein/ dehydration stress-responsive gene (RD21) C.G. S.X.
0.12 1e-4 48 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF C.G. S.X.
0.03 1e-4 48 At3g48340 823992 cysteine-type endopeptidase/ cysteine-type peptidase F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:unknown;MOPVBAF C.G. S.X.
0.08 6e-4 46 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 2e-1 38 Glycine max Gma.7980.1.A1_at BU546909 - - 1e-1 At3g19400 cysteine proteinase, putative C.G. S.X.
0.05 1e-6 54 Hordeum vulgare Contig2556_s_at Contig2556 - - 1e-9 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.03 2e-2 42 Oryza sativa Os06g0582600 AK067453.1 - Cysteine proteinase 7e-4 At3g49340 cysteine proteinase, putative C.G. S.X.
0.14 8e-10 65 Populus trichocarpa Ptp.1407.1.S1_at BP934810 hypothetical protein - 2e-35 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.03 6e-1 36 Triticum aestivum Ta.22672.1.S1_at CD878649 triticain alpha - 1e-12 At1g47128 RD21 (responsive to dehydration 21) C.G. S.X.
0.07 1e-5 50 Vitis vinifera 1612502_at BQ799624 hypothetical protein LOC100252080 - 4e-17 At3g19390 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
0.06 6e-2 38 Zea mays Zm.5987.1.A2_at AF019147.1 cysteine protease component of protease-inhibitor complex - 7e-14 At5g43060 cysteine proteinase, putative / thiol protease, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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