Gene omics information

Query gene ID At3g19320
Gene name leucine-rich repeat family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.4152.4At3g19320821466leucine-rich repeat family proteinF:protein binding;P:unknown;C:endomembrane system;PMOBFVAS.X.H.G.
0.7989.1At1g63450842651catalyticF:catalytic activity;P:unknown;C:membrane;POMS.X.H.G.
0.7184.2At1g53830841820ATPME2encodes a pectin methylesteraseS.X.H.G.
0.6781.6At4g09990826590unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POBS.X.H.G.
0.6781.6At5g15890831446unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMFOVBAS.X.H.G.
0.6378.1At2g47540819367pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.5873.8At3g24670822063pectate lyase family proteinF:pectate lyase activity;P:biological_process unknown;C:endomembrane system;PBFOS.X.H.G.
0.5570.6At4g15290827195ATCSLB05encodes a gene similar to cellulose synthaseS.X.H.G.
0.5368.6At5g49270834987SHV2 (SHAVEN 2)Involved in successfully establishing tip growth in root hairs.S.X.H.G.
0.5368.6At1g53680841805ATGSTU28 (GLUTATHIONE S-TRANSFERASE TAU 28)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
259.1100.0GSM265423Arabidopsis, root, longitudinal zone 3, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
241.6100.0GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
151.499.9GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
131.799.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
105.299.9GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
100.099.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
90.799.9GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
83.299.9GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
76.599.9GSM265422Arabidopsis, root, longitudinal zone 3, standard conditions, rep1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
74.299.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.492e-124446At1g49750841398leucine-rich repeat family proteinF:protein binding;P:unknown;C:chloroplast;MPBOFVAC.G.S.X.
0.043e-344At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVC.G.S.X.
0.021e-242At5g28300832914trihelix DNA-binding protein, putativeF:transcription factor activity;P:regulation of transcription;C:chloroplast;OMPFBVAC.G.S.X.
0.021e-242At5g38300833812unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOC.G.S.X.
0.021e-242At2g23290816861AtMYB70 (myb domain protein 70)Member of the R2R3 factor gene family.C.G.S.X.
0.021e-242At1g75550843891glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.025e-240At2g46780819291RNA binding / nucleic acid binding / nucleotide bindingF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOBAC.G.S.X.
0.045e-240At1g091766240938unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMOPFVAC.G.S.X.
0.015e-240At1g29340839808PUB17 (PLANT U-BOX 17)Encodes a protein containing a UND, a U-box, and an ARM domain. This protein has E3 ubiquitin ligase activity. It is required for cell death and full resistance specified by Arabidopsis RPM1 and RPS4 resistance proteins against Pseudomonas syringae pv tomato.C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.033e-138Glycine maxGmaAffx.46328.1.S1_atBM309375--4e-6At5g01020protein kinase family proteinC.G.S.X.
0.031e-344Hordeum vulgareEBem09_SQ005_C08_s_atEBem09_SQ005_C08--1e-1At4g21720unknown proteinC.G.S.X.
0.032e-242Oryza sativaOsAffx.16189.1.S1_at---0C.G.S.X.
0.032e-242Populus trichocarpaPtpAffx.220057.1.S1_x_atpmrna36333--3e-2At1g27710glycine-rich proteinC.G.S.X.
0.045e-240Triticum aestivumTa.16013.1.S1_atCA595031--3e+0At5g65410HB25 (HOMEOBOX PROTEIN 25)C.G.S.X.
0.022e-136Vitis vinifera1613977_atCF208330--4e+0At4g01310ribosomal protein L5 family proteinC.G.S.X.
0.023e-136Zea maysZm.13450.1.S1_atAY109219.1hypothetical protein LOC100278283-5e-3At2g23310ATRER1C1C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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