CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19200

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g19200 821454 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At4g19980 827742 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.50 65.3 At5g42630 834270 ATS (ABERRANT TESTA SHAPE) Encodes a member of the KANADI family of putative transcription factors. Involved in integument formation during ovule development and expressed at the boundary between the inner and outer integuments. It is essential for directing laminar growth of the inner integument.Along with KAN1 and KAN2, KAN4 is involved in proper localization of PIN1 in early embryogenesis. S.X. H.G.
0.40 50.8 At1g48510 841272 cytochrome c oxidase assembly protein surfeit-related F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPB S.X. H.G.
0.13 5.8 At3g26550 822263 DC1 domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
199.5 100.0 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
167.0 100.0 GSM133721 Deeken_A-1-Deeke-Tum_SLD_REP2 GSE5725 Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana
141.0 99.9 GSM142596 DB001_ATH1_A6-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
137.3 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
135.4 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
127.4 99.9 GSM142592 DB001_ATH1_A2-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
126.3 99.9 GSM142593 DB001_ATH1_A3-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
117.0 99.9 GSM142594 DB001_ATH1_A4-Brown-cal GSE6148 The trans-differentiation of cultured Arabidopsis cells
90.0 99.9 GSM218589 Protoplasted root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
88.5 99.9 GSM184535 Protoplasted root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 36 At5g03780 831726 TRFL10 (TRF-LIKE 10) Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro. C.G. S.X.
0.02 2e-1 36 At5g07420 830633 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.02 2e-1 36 At5g07430 830634 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.04 8e-1 34 At5g35610 833533 paired amphipathic helix repeat-containing protein F:molecular_function unknown;P:regulation of transcription, DNA-dependent;C:nucleus;MFPO C.G. S.X.
0.04 8e-1 34 At5g43180 834336 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO C.G. S.X.
0.01 8e-1 34 At2g37420 818318 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV C.G. S.X.
0.01 8e-1 34 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. C.G. S.X.
0.03 3e+0 32 At5g67120 836847 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 3e-1 36 Glycine max GmaAffx.27579.1.S1_at BU547542 - - 5e-1 At3g19200 unknown protein C.G. S.X.
0.04 6e+0 30 Hordeum vulgare HU08I01u_at HU08I01u - - 6e-1 At3g43150 unknown protein C.G. S.X.
0.03 6e+0 32 Oryza sativa OsAffx.20650.2.S1_at - - - 0 C.G. S.X.
0.05 3e-1 36 Populus trichocarpa PtpAffx.220600.1.S1_at pmrna37005 hypothetical protein - 1e-1 At3g19200 unknown protein C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.111278.1.S1_at CA644384 - - 4e+0 At5g03090 unknown protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1612064_at CF213487 hypothetical protein LOC100251081 - 2e-8 At2g31110 unknown protein C.G. S.X.
0.04 6e+0 30 Zea mays ZmAffx.1021.1.A1_at AI881561 - - 3e+0 At5g18240 MYR1 (MYb-related protein 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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