CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g19160

Gene name ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.77 88.0 At3g19160 821450 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) Encodes cytokinin synthase. S.X. H.G.
0.71 84.2 At2g35460 818111 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein F:unknown;P:unknown;C:cellular_component unknown;P S.X. H.G.
0.66 80.1 At1g64070 842711 RLM1 (RESISTANCE TO LEPTOSPHAERIA MACULANS 1) Encodes a TIR-NBS-LRR class of disease resistance protein effective against Leptosphaeria maculans. S.X. H.G.
0.66 80.1 At3g15910 820834 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.66 80.1 At4g17130 - - - S.X. H.G.
0.65 79.6 At1g67220 843042 HAC2 (HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 2) F:histone acetyltransferase activity, transcription cofactor activity, DNA binding;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOBPF S.X. H.G.
0.64 78.9 At2g27520 817298 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.64 78.9 At3g07250 819913 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:transport, nucleocytoplasmic transport;C:intracellular;MOPFVB S.X. H.G.
0.64 78.9 At3g58860 825055 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At3g06870 819871 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
664.6 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
126.7 99.9 GSM184497 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
124.4 99.9 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
121.9 99.9 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
114.8 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
111.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
107.6 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
106.8 99.9 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
97.0 99.9 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
93.8 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.16 1e-7 57 At1g25410 839127 ATIPT6 AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cds C.G. S.X.
0.18 2e-6 54 At4g24650 828567 ATIPT4 AB061402 Arabidopsis thaliana AtIPT4 mRNA for cytokinin synthase, complete cds C.G. S.X.
0.12 2e-3 44 At3g23630 821943 ATIPT7 Encodes an isopentenyl transferase involved in cytokinin biosynthesis. C.G. S.X.
0.02 5e-1 36 At4g04614 3770064 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPVB C.G. S.X.
0.02 2e+0 34 At5g19040 832023 IPT5 Encodes cytokinin synthase. C.G. S.X.
0.01 2e+0 34 At5g66620 836794 DAR6 (DA1-RELATED PROTEIN 6) F:zinc ion binding;P:unknown;C:unknown;MOBFPVA C.G. S.X.
0.02 2e+0 34 At3g08940 820043 LHCB4.2 (light harvesting complex PSII) Lhcb4.2 protein (Lhcb4.2, protein involved in the light harvesting complex of photosystem II C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 7e-1 36 Glycine max GmaAffx.56299.1.A1_at BU762932 - - 2e-10 At3g49960 peroxidase, putative C.G. S.X.
0.02 4e+0 32 Hordeum vulgare EBed02_SQ003_J03_at EBed02_SQ003_J03 - - 5e-2 At2g24490 RPA2 (REPLICON PROTEIN A2) C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.8000.1.S1_at - - - 0 C.G. S.X.
0.03 4e-2 40 Populus trichocarpa PtpAffx.208947.1.S1_at pmrna17728 cytokinin biosynthetic isopentenyltransferase - 3e-5 At1g68460 ATIPT1 (isopentenyltransferase 1) C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.113469.1.S1_at CA611700 - - 1e+0 At3g19160 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) C.G. S.X.
0.03 2e+0 32 Vitis vinifera 1617159_at CD797901 hypothetical protein LOC100242747 - 2e-1 At2g03780 translin family protein C.G. S.X.
0.03 8e-1 34 Zea mays ZmAffx.1448.1.S1_at 40794996-5 - - 7e-1 At4g37730 AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009691 The chemical reactions and pathways resulting in the formation of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00051 Cytokinin metabolism

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00908 Zeatin biosynthesis
01070 Biosynthesis of plant hormones
01100 Metabolic pathways
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