Gene omics information

Query gene ID At3g19070
Gene name cell wall protein-related
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5974.7At3g19070821441cell wall protein-relatedF:transcription factor activity;P:regulation of transcription;C:unknown;OMFPBVAS.X.H.G.
0.8994.6At2g33160817877glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity, nucleic acid binding;P:carbohydrate metabolic process;C:endomembrane system;PFBOMAS.X.H.G.
0.8290.9At1g33820840277unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBPS.X.H.G.
0.8089.8At2g01500814678PFS2 (PRETTY FEW SEEDS 2)PFS2 encodes a homeodomain gene that is a member of the WUS clade of transcription factors. It delays differentiation and maturation of primordia and regulates ovule patterning. The pfs2 mutant exhibits developmental defects in the maternal integuments and gametophyte, specifically, the boundary between the chalaza and the nucellus shifted towards the distal end of pfs2 ovule primordia. In addition, leaves displayed curling and petals were wavy and crenulated. Overexpression of PFS2 affects floral organ and leaf development. Single- and double-mutant analyses reveal that PFS2 activity represses AGAMOUS expression in young floral primordia. Also involved in regulation of response to low temperature.S.X.H.G.
0.7486.1At3g28280822454-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7486.1At1g29730839851ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAS.X.H.G.
0.7486.1At2g40440818638BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.7184.2At5g44330834458male sterility MS5 family proteinF:binding;P:biological_process unknown;C:unknown;POBAS.X.H.G.
0.7083.5At2g13640815849Golgi GDP mannose transporter (GONST1)F:unknown;P:transcription;C:nucleus;OMBPFVAS.X.H.G.
0.6982.9At1g11690837713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
472.8100.0GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
448.1100.0GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
445.3100.0GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
393.7100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
354.0100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
288.0100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
286.6100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
255.3100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
240.4100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
209.4100.0GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.022e-344At5g03150831919JKD (JACKDAW)JKD is a nuclear-localized putative transcription factor with three zinc finger domains. jkd mutants show a number of root patterning defects including ectopic periclinal divisions in the cortex, increased cell numbers in the cortical and epidermal layers, a disrupted QC marker expression pattern, and disorganized QC and columella cells. jkd mutants also have a reduced number of meristematic cells in their roots. JKD can interact with the SCR and SHR proteins implicated in root patterning, as well as another zinc finger transcription factor, MAGPIE. All of these interactions require the first zinc finger in JKD according to a Y2H assay. There are also transcriptional interactions among these proteins. The initiation of JKD transcription does not appear to depend on SCR and SHR, but later expression in the post-embryonic QC cells and ground tissue initials is reduced in scr and shr mutants. JKD also appears to be required for SCR transcription beginning in the embryo. There is also some evidence that JKD plays a role in promoting the movement of SHR into the nucleus, particularly in QC cells, but this may be indirect.C.G.S.X.
0.028e-342At5g19260832046unknown proteinF:unknown;P:unknown;C:unknown;MOFPBVC.G.S.X.
0.028e-342At1g08340837354rac GTPase activating protein, putativeF:Rac GTPase activator activity;P:signal transduction;C:intracellular;MOFPVBAC.G.S.X.
0.033e-240At3g58850825054PAR2 (PHY RAPIDLY REGULATED 2)Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix (bHLP) protein. Closely related to PAR1 (At2g42870). Up regulated after simulated shade perception. Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response. Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510).C.G.S.X.
0.023e-240At3g20950821645CYP705A32member of CYP705AC.G.S.X.
0.043e-240At3g22070821769proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MOBPFVAC.G.S.X.
0.023e-240At1g47340841137F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PMOC.G.S.X.
0.023e-240At1g06920837202OFP4 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 4)F:unknown;P:biological_process unknown;C:unknown;PMOBFC.G.S.X.
0.013e-240At1g53900841828GTP binding / translation initiation factorF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFPAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.045e-550Glycine maxGmaAffx.50018.1.S1_s_atBG550677--6e-2At5g09310unknown proteinC.G.S.X.
0.021e+034Hordeum vulgareContig7046_atContig7046--2e+0At2g21600ATRER1BC.G.S.X.
0.024e-344Oryza sativaOs12g0541400BQ907958-Hypothetical protein3e+0At5g01300phosphatidylethanolamine-binding family proteinC.G.S.X.
0.032e-138Populus trichocarpaPtpAffx.224051.1.S1_x_atpmrna42286hypothetical protein-6e-1At3g46900COPT2C.G.S.X.
0.043e-240Triticum aestivumTaAffx.84129.1.S1_s_atCA644155--2e-2At5g18690AGP25 (ARABINOGALACTAN PROTEINS 25)C.G.S.X.
0.054e-548Vitis vinifera1617182_atCB921793--5e-3At1g62240unknown proteinC.G.S.X.
0.034e+032Zea maysZmAffx.228.1.S1_atAI670240--5e-2At5g59000zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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