CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g18600

Gene name DEAD/DEAH box helicase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.52 67.4 At3g18600 821391 DEAD/DEAH box helicase, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:nucleolus;BOMFPAV S.X. H.G.
0.83 91.4 At2g40700 818665 DEAD/DEAH box helicase, putative (RH17) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:unknown;BOMFPAV S.X. H.G.
0.79 89.1 At3g09720 820129 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.75 86.9 At3g21540 821708 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:rRNA processing;C:nucleolus, heterotrimeric G-protein complex;MFOPBA S.X. H.G.
0.73 85.5 At3g57940 824963 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOFAPV S.X. H.G.
0.69 82.9 At4g05410 825889 transducin family protein / WD-40 repeat family protein F:nucleotide binding, nucleic acid binding;P:mitochondrial fission;C:nucleolus, small nucleolar ribonucleoprotein complex, anaphase-promoting complex, CUL4 RING ubiquitin ligase complex;MFOBPVA S.X. H.G.
0.65 79.6 At3g06530 819831 binding F:binding;P:unknown;C:chloroplast, vacuole;MFOPB S.X. H.G.
0.63 78.1 At3g57660 824935 NRPA1 Encodes a subunit of RNA polymerase I (aka RNA polymerase A). S.X. H.G.
0.59 74.7 At3g11964 820370 RNA binding F:RNA binding;P:mRNA processing, RNA processing;C:nucleolus, plasma membrane;BOMFPA S.X. H.G.
0.52 67.4 At4g28450 828962 nucleotide binding / protein binding This gene is predicted to encode a protein with a DWD motif. It can bind to DDB1a in Y2H assays and may be involved in the formation of a CUL4-based E3 ubiquitin ligase S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
32.1 99.7 E-MEXP-849-raw-cel-1181981046
25.0 99.6 GSM133120 RIKEN-YAMAUCHI2B GSE5687 AtGenExpress: Different temperature treatment of seeds
23.1 99.6 GSM133307 RIKEN-NAKABAYASHI3A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
22.0 99.6 E-MEXP-849-raw-cel-1181981022
21.9 99.6 GSM133308 RIKEN-NAKABAYASHI4A GSE5700 AtGenExpress: Effect of ABA during seed imbibition
21.5 99.6 GSM133310 RIKEN-NAKABAYASHI5B GSE5700 AtGenExpress: Effect of ABA during seed imbibition
21.4 99.6 E-MEXP-849-raw-cel-1181981038
21.1 99.6 E-MEXP-849-raw-cel-1181981006
20.6 99.6 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
18.2 99.5 E-MEXP-849-raw-cel-1181981014
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.26 3e-19 97 At5g65900 836719 DEAD/DEAH box helicase, putative F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:unknown;C:cellular_component unknown;MOBFPVA C.G. S.X.
0.02 2e-7 57 At5g54910 835582 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:nucleolus;BOMFPAV C.G. S.X.
0.03 1e-2 42 At5g62190 836340 PRH75 DEAD/DEAH box RNA helicase PRH75 C.G. S.X.
0.01 5e-2 40 At5g22320 832292 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPFVA C.G. S.X.
0.01 5e-2 40 At3g01540 821116 DRH1 (DEAD BOX RNA HELICASE 1) RNA HELICASE DRH1 C.G. S.X.
0.01 2e-1 38 At1g47750 841186 PEX11A (PEROXIN 11A) member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 1e-22 109 Glycine max Gma.3170.1.S1_at BE659244 - - 5e-23 At3g18600 DEAD/DEAH box helicase, putative C.G. S.X.
0.02 3e-2 40 Hordeum vulgare Contig8634_at Contig8634 - - 2e-17 At2g42520 DEAD box RNA helicase, putative C.G. S.X.
0.06 4e-1 38 Oryza sativa Os06g0535100 9634.m03255 - Probable ATP-dependent helicase pitchoune 2e-1 At3g18600 DEAD/DEAH box helicase, putative C.G. S.X.
0.23 6e-21 103 Populus trichocarpa PtpAffx.76347.1.A1_at CV234335 hypothetical protein - 2e-21 At3g18600 DEAD/DEAH box helicase, putative C.G. S.X.
0.03 2e-4 48 Triticum aestivum Ta.24720.2.S1_at CA738315 - - 7e-5 At3g22330 PMH2 (putative mitochondrial RNA helicase 2) C.G. S.X.
0.02 3e-1 36 Vitis vinifera 1621474_at CF372414 hypothetical protein LOC100251060 - 6e-26 At5g26742 emb1138 (embryo defective 1138) C.G. S.X.
0.05 4e-4 46 Zea mays Zm.4304.1.S1_at AI834719 - - 1e-3 At3g18600 DEAD/DEAH box helicase, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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