CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g18570

Gene name glycine-rich protein / oleosin

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.59 74.7 At3g18570 821388 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;P S.X. H.G.
0.94 96.7 At5g01670 831701 aldose reductase, putative F:oxidoreductase activity;P:oxidation reduction;C:unknown;BMOFPA S.X. H.G.
0.92 96.0 At3g05260 819690 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.86 93.1 At1g27990 839692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.86 93.1 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.85 92.4 At2g19320 816449 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.85 92.4 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. S.X. H.G.
0.83 91.4 At3g12960 820482 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.83 91.4 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV S.X. H.G.
0.83 91.4 At4g09600 826545 GASA3 (GAST1 PROTEIN HOMOLOG 3) One of GASA gene family which is related to a GA-stimulated transcript (GAST) from tomato. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
368.1 100.0 GSM131702 ATGE_82_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
332.7 100.0 GSM131701 ATGE_82_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
330.2 100.0 GSM131706 ATGE_84_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
323.6 100.0 GSM131707 ATGE_84_B GSE5634 AtGenExpress: Developmental series (siliques and seeds)
301.9 100.0 GSM131700 ATGE_82_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
271.0 100.0 GSM131708 ATGE_84_D GSE5634 AtGenExpress: Developmental series (siliques and seeds)
259.3 100.0 E-ATMX-1-raw-cel-1112746267
250.8 100.0 GSM131703 ATGE_83_A GSE5634 AtGenExpress: Developmental series (siliques and seeds)
245.7 100.0 GSM131705 ATGE_83_C GSE5634 AtGenExpress: Developmental series (siliques and seeds)
233.8 100.0 E-ATMX-1-raw-cel-1112746209
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-2 40 At5g11980 831071 conserved oligomeric Golgi complex component-related / COG complex component-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP C.G. S.X.
0.01 2e-1 36 At2g25170 817055 PKL (PICKLE) Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis. C.G. S.X.
0.04 1e+0 34 At5g37760 833754 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMPFAV C.G. S.X.
0.02 1e+0 34 At5g55550 835649 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MPOFBAV C.G. S.X.
0.01 1e+0 34 At5g42480 834255 ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6) Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast. C.G. S.X.
0.03 1e+0 34 At3g63095 5008106 - Encodes a Protease inhibitor/seed storage/LTP family protein C.G. S.X.
0.03 1e+0 34 At3g03920 821062 Gar1 RNA-binding region family protein F:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 6e-3 42 Glycine max GmaAffx.8316.1.S1_at BE823563 - - 6e-3 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.04 8e-3 40 Hordeum vulgare HM03F19u_at HM03F19u - - 2e-2 At3g18570 glycine-rich protein / oleosin C.G. S.X.
0.04 1e-1 38 Oryza sativa OsAffx.30679.2.S1_x_at - - - 0 C.G. S.X.
0.03 1e+0 34 Populus trichocarpa PtpAffx.214091.1.S1_at pmrna27435 hypothetical protein - 1e-3 At1g23720 proline-rich extensin-like family protein C.G. S.X.
0.04 3e-1 36 Triticum aestivum Ta.26670.1.A1_at CD491523 - - 9e-20 At4g26850 VTC2 (vitamin c defective 2) C.G. S.X.
0.05 1e+0 32 Vitis vinifera 1620940_at CF201899.1 - - 2e+1 At5g66990 RWP-RK domain-containing protein C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.783.1.S1_at AI745854 - - 8e-7 At1g51730 RWD domain-containing protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0019915 The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage