CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g18510

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.29 30.3 At2g45730 819181 eukaryotic initiation factor 3 gamma subunit family protein F:translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:cellular_component unknown;MFOP S.X. H.G.
0.20 14.4 At1g73940 843731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.07 1.9 At4g31810 829310 enoyl-CoA hydratase/isomerase family protein F:3-hydroxyisobutyryl-CoA hydrolase activity, catalytic activity;P:fatty acid beta-oxidation, metabolic process;C:mitochondrion;BOMFPA S.X. H.G.
0.06 1.4 At1g16740 838245 ribosomal protein L20 family protein F:structural constituent of ribosome, RNA binding;P:translation, ribosome biogenesis;C:ribosome, intracellular;BOPM S.X. H.G.
0.05 1.1 At5g44710 834500 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO S.X. H.G.
0.05 1.1 At5g62440 836365 - Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
83.1 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
81.3 99.9 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
78.4 99.9 GSM253651 Ler 1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
77.8 99.9 GSM134310 Penfield_1-12_embryo-control_Rep3_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
70.3 99.9 GSM253649 Col-0-2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
68.7 99.9 GSM134314 Penfield_1-16_embryo-PAC_Rep1_ATH1 GSE5751 The early post-germinative embryo and endosperm transcriptomes in Arabidopsis
65.1 99.8 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
64.1 99.8 GSM184832 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
60.5 99.8 GSM253648 Col-0-1 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
55.5 99.8 GSM184831 Arabidopsis, root, longitudinal zone 1, standard conditions, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 9e-2 36 At4g19390 827680 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPA C.G. S.X.
0.04 4e-1 34 At4g31700 829298 RPS6 (RIBOSOMAL PROTEIN S6) Encodes a putative ribosomal protein S6 (rps6). C.G. S.X.
0.07 4e-1 34 At3g25905 822187 CLE27 (CLAVATA3/ESR-RELATED 27) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. C.G. S.X.
0.02 4e-1 34 At2g03880 814914 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA C.G. S.X.
0.04 4e-1 34 At1g67050 843025 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFBV C.G. S.X.
0.00 4e-1 34 At1g70320 843368 UPL2 (UBIQUITIN-PROTEIN LIGASE 2) encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. C.G. S.X.
0.05 2e+0 32 At5g22880 832352 HTB2 Encodes a histone 2B (H2B) protein. This protein can be ubiquitinated in planta, and this modification depends on the HUB1 and HUB2 E3 ubiquitin ligases. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 5e-1 34 Glycine max GmaAffx.40742.1.S1_at BG352179 - - 1e-2 At4g37685 unknown protein C.G. S.X.
0.05 3e+0 30 Hordeum vulgare Contig14924_s_at Contig14924 - - 8e-1 At1g66560 WRKY64 C.G. S.X.
0.05 3e+0 32 Oryza sativa OsAffx.29234.1.S1_x_at - - - 0 C.G. S.X.
0.05 1e-1 36 Populus trichocarpa PtpAffx.26858.1.S1_at CV229901 hypothetical protein - 4e-13 At1g56720 protein kinase family protein C.G. S.X.
0.14 6e-3 40 Triticum aestivum Ta.7693.1.A1_x_at BG607883 - - 2e-2 At3g18510 unknown protein C.G. S.X.
0.04 4e-1 32 Vitis vinifera 1615448_at CF568935 - - 1e-61 At5g59910 HTB4 C.G. S.X.
0.06 6e-1 32 Zea mays Zm.17055.1.S1_at CF972499 - - 2e-2 At1g12665 - C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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