Gene omics information

Query gene ID At3g18480
Gene name AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g18480821377AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation.S.X.H.G.
0.5267.4At2g32850817846protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVAS.X.H.G.
0.4457.2At5g51430835217EYE (EMBRYO YELLOW)Encodes a protein that is homologous to Cog7, a subunit of the conserved oligomeric Golgi (COG) complex, which is required for the normal morphology and function of the Golgi apparatus. It is likely to be involved in transport or retention of Golgi-localized proteins and in maintenance of Golgi morphology.S.X.H.G.
0.4253.9At5g04420830321kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;MOPFBVAS.X.H.G.
0.4050.8At3g06580819837GALKEncodes a protein with galactose kinase activity. The gene was shown to complement the yeast Δgal1 mutant defective in the galactokinase gene GAL1.S.X.H.G.
0.3846.7At5g28220832898bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFOPABS.X.H.G.
0.3745.0At5g63840836504RSW3 (RADIAL SWELLING 3)radial swelling mutant shown to be specifically impaired in cellulose production. Encodes the alpha-subunit of a glucosidase II enzyme.S.X.H.G.
0.3643.6At1g10290837568ADL6 (DYNAMIN-LIKE PROTEIN 6)involved in trafficking from the trans-Golgi Network to the central vacuole.S.X.H.G.
0.3643.6At5g16300831491-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOS.X.H.G.
0.3643.6At5g11560831028catalyticF:catalytic activity;P:unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MFOBPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
16.499.5GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
15.799.5GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
15.199.4GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
14.899.4GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
14.699.4GSM226548Slice6JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
14.499.4GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
12.799.3GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
12.699.3GSM265420Arabidopsis, root, longitudinal zone 2, standard conditions, rep 1GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.499.3GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
12.499.3GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-138At3g22790821850kinase interacting family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVC.G.S.X.
0.013e-138At3g42660823286nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAVC.G.S.X.
0.013e-138At2g36190818191AtcwINV4 (Arabidopsis thaliana cell wall invertase 4)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:sucrose catabolic process, using beta-fructofuranosidase, carbohydrate metabolic process;C:endomembrane system;BPFOMAC.G.S.X.
0.011e+036At4g22200828311AKT2/3 (ARABIDOPSIS POTASSIUM TRANSPORT 2/3)Encodes a photosynthate- and light-dependent inward rectifying potassium channel with unique gating properties that are regulated by phosphorylation. Expressed in guard cell protoplasts and in the phloem and xylem of aerial portions of the plant. The channel can coassemble with another K+ channel, KAT1, in vitro. In guard cells, AKT2/3 is responsible for the Ca2+ sensitivity of the K+ uptake channel. In the phloem, it regulates the sucrose/H+ symporters via the phloem potential.C.G.S.X.
0.011e+036At3g43120823371auxin-responsive protein-relatedF:calmodulin binding;P:response to auxin stimulus;C:cellular_component unknown;POC.G.S.X.
0.011e+036At3g24440822034VRN5 (VERNALIZATION 5)Encodes Vernalization Insensitive 3-like 1 (VIL1). VIL1 is involved in the photoperiod and vernalization of Arabidopsis by regulating expression of the related floral repressors Flowering Locus C (FLC) and Flowering Locus M (FLM). VIL1, along with VIN3 (Vernalization Insensitive 3) is necessary for the chromatin modification to FLC and FLM.C.G.S.X.
0.011e+036At2g26780817219bindingF:binding;P:biological_process unknown;C:membrane;MFPOC.G.S.X.
0.011e+036At1g69860843322proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:membrane;BPMFOC.G.S.X.
0.011e+036At1g31430840033pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.293e-26121Glycine maxGmaAffx.85366.2.S1_atCA801831--8e-27At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.041e-757Hordeum vulgareContig17498_atContig17498--1e-7At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.042e-346Oryza sativaOs03g0710900CB661798-CASP protein-like6e-4At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.455e-68260Populus trichocarpaPtpAffx.210456.1.S1_atpmrna20532hypothetical protein-4e-68At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.172e-1171Triticum aestivumTa.7735.1.S1_atCD896851--2e-11At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.206e-58224Vitis vinifera1616071_atCB978649hypothetical protein LOC100259260-5e-58At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
0.158e-652Zea maysZm.936.1.A1_atCF052340--1e-5At3g18480AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006891The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network).
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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