Gene omics information

Query gene ID At3g18110
Gene name EMB1270 (embryo defective 1270)
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At3g18110821336EMB1270 (embryo defective 1270)F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBAS.X.H.G.
0.4355.3At4g14510827098RNA bindingF:RNA binding;P:biological_process unknown;C:chloroplast;POMFBVAS.X.H.G.
0.3133.8At3g02450821139cell division protein ftsH, putativeF:in 6 functions;P:unknown;C:integral to membrane, chloroplast;BOMFPAVS.X.H.G.
0.3032.1At2g35155818082catalyticF:catalytic activity;P:biological_process unknown;C:cellular_component unknown;PBS.X.H.G.
0.2726.2At1g74850843824PTAC2 (PLASTID TRANSCRIPTIONALLY ACTIVE2)Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.S.X.H.G.
0.2014.4At4g23940828494FtsH protease, putativeF:in 7 functions;P:proteolysis;C:chloroplast;OBMFPAVS.X.H.G.
0.1710.2At3g02660821282emb2768 (EMBRYO DEFECTIVE 2768)F:RNA binding, tyrosine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:embryonic development ending in seed dormancy, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast;OBFMPAS.X.H.G.
0.124.9At3g12210820401sequence-specific DNA bindingF:sequence-specific DNA binding;P:biological_process unknown;C:intracellular;MFPOAS.X.H.G.
0.061.4At4g39460830101SAMC1 (S-ADENOSYLMETHIONINE CARRIER 1)Encodes a plastid metabolite transporter required for the import of S-Adenosylmethionine from the cytosol. Impaired function of SAMT1 led to decreased accumulation of prenyllipids and mainly affected the chlorophyll pathway.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
156.299.9GSM133768Lindsey_1-20_torpedo-basal_Rep5_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
17.899.5GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
11.799.3GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
10.799.2GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
8.198.9GSM133709Short_1-4_control_Rep2_ATH1GSE5722Functional Genomics of Ozone Stress in Arabidopsis.
7.798.9GSM142600BD001_ATH1_A4-DAVIE-T13GSE6149Targets of the mci genes.
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.012e-346At1g25360839121pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAC.G.S.X.
0.014e-242At4g24700828572unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.011e-140At5g60720836193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBMC.G.S.X.
0.011e-140At5g08310830727pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBAC.G.S.X.
0.011e-140At3g03050821148CSLD3 (CELLULOSE SYNTHASE-LIKE D3)encodes a cellulose synthase like protein. mutations initiate root hairs that rupture at their tip soon after initiation. is required for the synthesis of a noncellulosic wall polysaccharide.C.G.S.X.
0.011e-140At1g32770840171ANAC012 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 12)Encodes SND1, a NAC Domain transcription factor involved in secondary wall biosynthesis in fibers. Expressed specifically in interfascicular fibers and xylary fibers in stems. Expressed in the procambium of stem inflorescences and root. May act as a negative regulator of secondary wall thickening in xylary fibers. Acts redundantly with NST1 to control development of secondary walls in siliques.C.G.S.X.
0.011e-140At1g31040839990unknown proteinF:unknown;P:biological_process unknown;C:unknown;PC.G.S.X.
0.011e-140At1g76060843938EMB1793 (EMBRYO DEFECTIVE 1793)mutant has Embryo defectC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.012e-140Glycine maxGmaAffx.65939.1.A1_atCD417793--1e+0At5g14910heavy-metal-associated domain-containing proteinC.G.S.X.
0.013e-138Hordeum vulgareHVSMEc0010O09r2_atHVSMEc0010O09r2--1e+0At5g28630glycine-rich proteinC.G.S.X.
0.011e+038Oryza sativaOsAffx.29139.1.S1_at---0C.G.S.X.
0.201e-1173Populus trichocarpaPtpAffx.222238.1.S1_atpmrna39523hypothetical protein-1e-11At3g18110EMB1270 (embryo defective 1270)C.G.S.X.
0.016e-138Triticum aestivumTaAffx.59844.1.S1_s_atCA594538--3e+0At3g02310SEP2 (SEPALLATA 2)C.G.S.X.
0.016e-136Vitis vinifera1613777_atCF404767--1e+0At3g04430anac049 (Arabidopsis NAC domain containing protein 49)C.G.S.X.
0.016e-240Zea maysZm.6407.1.A1_atAY108032.1DNA-binding protein-2e+0At3g44310NIT1C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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