CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g17690

Gene name ATCNGC19

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g17690 821036 ATCNGC19 member of Cyclic nucleotide gated channel family S.X. H.G.
0.73 85.5 At1g70130 843349 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.67 81.6 At2g36650 818237 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOBFPAV S.X. H.G.
0.43 55.3 At3g59740 825143 receptor lectin kinase 3 (lecRK3) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.33 38.1 At2g26380 817178 disease resistance protein-related / LRR protein-related F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
1445.1 100.0 GSM184922 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
1260.8 100.0 GSM184923 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
218.7 100.0 GSM184924 Arabidopsis, root cells, protophloem, 140 mM NaCl, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
124.6 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
92.1 99.9 GSM311281 Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
89.4 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
76.3 99.9 GSM284396 Arabidopsis GPSc2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
76.0 99.9 GSM184906 Arabidopsis, root cells, protophloem, standard conditions, replicate 3 GSE7641 Expression analysis of root cell-types after treatment with salt
71.0 99.9 GSM184499 Endodermis&Pericycle root cells 2hr transitory KNO3 treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
68.6 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.72 0 900 At3g17700 821037 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1) cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. C.G. S.X.
0.01 4e-3 44 At1g15990 838169 ATCNGC7 (CYCLIC NUCLEOTIDE GATED CHANNEL 7) member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 2e-2 42 At1g19780 838566 ATCNGC8 (CYCLIC NUCLEOTIDE GATED CHANNEL 8) member of Cyclic nucleotide gated channel family C.G. S.X.
0.01 7e-2 40 At2g28480 817396 RNA binding F:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOB C.G. S.X.
0.01 3e-1 38 At4g13070 826921 group II intron splicing factor CRS1-related F:RNA binding;P:biological_process unknown;C:unknown;POMB C.G. S.X.
0.01 1e+0 36 At5g14870 831339 CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18) Encodes a member of the cyclic nucleotide gated channel family that is asymmetrically localized to the plasma membrane at the growing tip of the pollen tube and is involved in pollen tube growth. It likely directly transduces a cNMP signal into an ion flux that can produce a localized signal capable of regulating the pollen tip-growth machinery. C.G. S.X.
0.01 1e+0 36 At5g55490 835642 GEX1 (GAMETE EXPRESSED PROTEIN 1) Encodes a transmembrane domain containing protein that is expressed in pollen germ cells. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-4 50 Glycine max GmaAffx.31230.1.S1_at BE823859 - - 2e-5 At3g17690 ATCNGC19 C.G. S.X.
0.01 5e-1 36 Hordeum vulgare Contig7410_at Contig7410 - - 7e-3 At5g57040 lactoylglutathione lyase family protein / glyoxalase I family protein C.G. S.X.
0.05 6e-7 57 Oryza sativa Os06g0207700 9634.m01032 - Ion transport protein family protein 4e-7 At3g17690 ATCNGC19 C.G. S.X.
0.08 7e-12 73 Populus trichocarpa Ptp.4235.1.S1_at CV283736 hypothetical protein - 2e-12 At3g17690 ATCNGC19 C.G. S.X.
0.01 2e-2 42 Triticum aestivum Ta.7487.2.A1_at CA639880 - - 3e-1 At5g35560 DENN (AEX-3) domain-containing protein C.G. S.X.
0.01 8e-2 38 Vitis vinifera 1614448_at CB976275 hypothetical protein LOC100247399 - 4e-1 At2g25140 CLPB4 (CASEIN LYTIC PROTEINASE B4) C.G. S.X.
0.02 2e+0 34 Zea mays Zm.8646.2.A1_at CF635039 - - 2e-1 At4g39680 SAP domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006811 The directed movement of charged atoms or small charged molecules into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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