Gene omics information

Query gene ID At3g17680
Gene name -
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5065.3At3g17680821035-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBFS.X.H.G.
0.9396.4At4g15830827264bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MPOFS.X.H.G.
0.8693.1At3g02640821289unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;POS.X.H.G.
0.7989.1At1g02730839467ATCSLD5Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems.S.X.H.G.
0.7788.0At5g36710833636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PS.X.H.G.
0.7586.9At4g05190825867ATK5 (ARABIDOPSIS THALIANA KINESIN 5)ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts.S.X.H.G.
0.7486.1At1g18370838418HIK (HINKEL)Mutant has cytokinesis defects; seedling lethalS.X.H.G.
0.7486.1At1g76310843964CYCB2core cell cycle genesS.X.H.G.
0.7486.1At3g25980822195mitotic spindle checkpoint protein, putative (MAD2)F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOPS.X.H.G.
0.7385.5At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
63.999.8GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.899.7GSM133763Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.999.6GSM133755Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.099.6GSM242958Mock day 3 (day3E2)GSE9605Target genes of AGAMOUS during early flower development in Arabidopsis
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.334e-29129At1g48405841261-F:molecular_function unknown;P:biological_process unknown;C:unknown;POBFMC.G.S.X.
0.012e-344At2g22560816788-F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAVC.G.S.X.
0.018e-342At2g30950817646VAR2 (VARIEGATED 2)Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity.C.G.S.X.
0.023e-240At2g33040817866ATP synthase gamma chain, mitochondrial (ATPC)F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPAC.G.S.X.
0.013e-240At1g77280844064protein kinase family proteinF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVAC.G.S.X.
0.015e-136At5g24300832497SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1)SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch.C.G.S.X.
0.015e-136At5g53130835393CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1)member of Cyclic nucleotide gated channel familyC.G.S.X.
0.025e-136At4g09040826483RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBAC.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-240Glycine maxGma.13291.1.S1_atCD395651--2e-2At3g17680-C.G.S.X.
0.022e-136Hordeum vulgareContig13947_atContig13947--8e-9At5g64940ATATH13C.G.S.X.
0.039e-136Oryza sativaOs12g05210009640.m03256--2e-2At4g36660unknown proteinC.G.S.X.
0.054e-550Populus trichocarpaPtpAffx.215361.1.S1_atpmrna29504hypothetical protein-3e-5At3g17680-C.G.S.X.
0.032e+034Triticum aestivumTaAffx.4843.1.S1_atCA730569--1e+0At3g17680-C.G.S.X.
0.035e-134Vitis vinifera1620051_atCF211598--3e+0Atmg00480-C.G.S.X.
0.023e+032Zea maysZm.6837.1.A1_atAI065432--8e-4At1g74800galactosyltransferase family proteinC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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