CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At3g17680

Gene name -

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.50 65.3 At3g17680 821035 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMBF S.X. H.G.
0.93 96.4 At4g15830 827264 binding F:binding;P:biological_process unknown;C:cellular_component unknown;MPOF S.X. H.G.
0.86 93.1 At3g02640 821289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO S.X. H.G.
0.79 89.1 At1g02730 839467 ATCSLD5 Encodes a gene similar to cellulose synthase. Knock-out mutant has reduced growth, reduced xylan level and reduced xylan synthase activity in stems. S.X. H.G.
0.77 88.0 At5g36710 833636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.75 86.9 At4g05190 825867 ATK5 (ARABIDOPSIS THALIANA KINESIN 5) ATK5 encodes a kinesin protein involved in microtubule spindle morphogenesis. It acts as a minus-end directed motor as well as a plus-end tracking protein (+TIP). Localizes to mitotic spindle midzones and regions rich in growing plus-ends within phragmoplasts. S.X. H.G.
0.74 86.1 At1g18370 838418 HIK (HINKEL) Mutant has cytokinesis defects; seedling lethal S.X. H.G.
0.74 86.1 At1g76310 843964 CYCB2 core cell cycle genes S.X. H.G.
0.74 86.1 At3g25980 822195 mitotic spindle checkpoint protein, putative (MAD2) F:DNA binding;P:mitosis, mitotic cell cycle spindle assembly checkpoint;C:endomembrane system;MFOP S.X. H.G.
0.73 85.5 At3g14190 820636 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
63.9 99.8 GSM133774 Lindsey_1-26_torpedo-meristem_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
30.7 99.7 E-MEXP-1799-raw-cel-1665601167
27.6 99.7 E-MEXP-1799-raw-cel-1665601225
26.0 99.7 E-MEXP-1799-raw-cel-1665601126
25.8 99.7 GSM133763 Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
25.3 99.6 E-MEXP-1799-raw-cel-1665601205
24.9 99.6 GSM133755 Lindsey_1-7_heart-stage-cotyledon_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
24.7 99.6 E-MEXP-1799-raw-cel-1665601185
24.2 99.6 E-MEXP-682-raw-cel-922397577
24.0 99.6 GSM242958 Mock day 3 (day3E2) GSE9605 Target genes of AGAMOUS during early flower development in Arabidopsis
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.33 4e-29 129 At1g48405 841261 - F:molecular_function unknown;P:biological_process unknown;C:unknown;POBFM C.G. S.X.
0.01 2e-3 44 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.01 8e-3 42 At2g30950 817646 VAR2 (VARIEGATED 2) Metalloprotease that functions in thylakoid membrane biogenesis. Involved in the repair of PSII following damaged incurred during photoinhibition. Forms a complex with VAR1. Mutants show a variegated phenotype, which decreases during development. Transcript and protein levels increase with light intensity. C.G. S.X.
0.02 3e-2 40 At2g33040 817866 ATP synthase gamma chain, mitochondrial (ATPC) F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:proton transport, ATP synthesis coupled proton transport;C:in 7 components;OBMFPA C.G. S.X.
0.01 3e-2 40 At1g77280 844064 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, response to stress;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 5e-1 36 At5g24300 832497 SSI1 (SUPPRESSOR OF SALICYLIC ACID INSENSITIVITY 1) SSI is a plastidial enzyme and crucial for the synthesis of normal amylopectin in the leaves of Arabidopsis. The absence of SSI results in a deficiency in the number of shorter glucans which in turn affect the formation and connection of the amylopectin clusters in starch. C.G. S.X.
0.01 5e-1 36 At5g53130 835393 CNGC1 (CYCLIC NUCLEOTIDE GATED CHANNEL 1) member of Cyclic nucleotide gated channel family C.G. S.X.
0.02 5e-1 36 At4g09040 826483 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 4e-2 40 Glycine max Gma.13291.1.S1_at CD395651 - - 2e-2 At3g17680 - C.G. S.X.
0.02 2e-1 36 Hordeum vulgare Contig13947_at Contig13947 - - 8e-9 At5g64940 ATATH13 C.G. S.X.
0.03 9e-1 36 Oryza sativa Os12g0521000 9640.m03256 - - 2e-2 At4g36660 unknown protein C.G. S.X.
0.05 4e-5 50 Populus trichocarpa PtpAffx.215361.1.S1_at pmrna29504 hypothetical protein - 3e-5 At3g17680 - C.G. S.X.
0.03 2e+0 34 Triticum aestivum TaAffx.4843.1.S1_at CA730569 - - 1e+0 At3g17680 - C.G. S.X.
0.03 5e-1 34 Vitis vinifera 1620051_at CF211598 - - 3e+0 Atmg00480 - C.G. S.X.
0.02 3e+0 32 Zea mays Zm.6837.1.A1_at AI065432 - - 8e-4 At1g74800 galactosyltransferase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage